Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24750 386 / 4e-136 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT3G08920 102 / 6e-26 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT2G42220 96 / 3e-23 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G27700 54 / 1e-08 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT5G66040 47 / 1e-06 STR16 sulfurtransferase protein 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043306 [exp] 527 / 0 AT4G24750 389 / 3e-137 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10004811 [exp] 105 / 3e-27 AT3G08920 239 / 3e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10002485 [exp] 104 / 8e-27 AT3G08920 239 / 3e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10021032 [exp] 88 / 2e-20 AT2G42220 304 / 2e-105 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10023820 [exp] 86 / 1e-19 AT2G42220 302 / 1e-104 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10012566 [exp] 50 / 3e-07 AT5G66040 129 / 1e-39 sulfurtransferase protein 16 (.1.2) Lus10005635 [exp] 48 / 2e-06 AT5G66040 144 / 1e-44 sulfurtransferase protein 16 (.1.2) Lus10023243 [exp] 47 / 8e-06 AT4G27700 305 / 7e-106 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10041843 [exp] 43 / 7e-05 AT4G35770 182 / 6e-59 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G086100 [exp] 425 / 2e-151 AT4G24750 416 / 1e-147 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.006G100600 [exp] 102 / 7e-26 AT3G08920 238 / 6e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.006G059200 [exp] 95 / 5e-23 AT2G42220 318 / 4e-111 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.002G014900 [exp] 50 / 3e-07 AT4G35770 151 / 8e-47 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Potri.012G020700 [exp] 47 / 4e-06 AT4G27700 262 / 4e-89 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.015G008000 [exp] 47 / 4e-06 AT4G27700 268 / 2e-91 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.014G131300 [exp] 44 / 1e-05 AT2G21045 204 / 2e-68 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.005G106400 [exp] 44 / 4e-05 AT4G35770 199 / 1e-64 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10019454 pacid=23181484 polypeptide=Lus10019454 locus=Lus10019454.g ID=Lus10019454.BGIv1.0 annot-version=v1.0 ATGGGGACTCTGGGGCTTCCTTCTCTCAATCTCCTTCAACTTTCTCATTCCCCGAGCAATTGGCAGCTCTCAGTGAAGGAAGTCGCAATGGCTACTCCTC TGAAACTTAGCTCCGCTGTCAAAACAAGTCAAAATTCTCGTAGGAGCTCTGTGGAAATTCGTGCTGCCAATGAGGACCTTGAGCTGAAGCAGATGAGAGA TATGGCCGCTGCTAAGAAGAGATGGGATGTTATGATTAGGGAAGGAAAAGTAAAGATGCTTACCCCAAGGGAAGCAGGGTATGCCATTCAACTCTCCAAC AAAACTCTTCTGGATGTTAGGCCCTCGGTTGAACATGAAAAGGCATGGGTTAAAGGCTCAACTTGGATTCCTATGTTTGAAGTTGATAGCAACGTTGACA TTGGAGCGATTTCGAAAAAGATCACAAGCTTTGCCATGGGGGGTTGGTGGAGTGGCATGCCTACAGTATCTTACAACAACCAGTTCTTATCTAAGGTGGA GGAGAAGTTCCCACAGGACACGGACCTCATCGTTGCATGCCAGAAAGGACTAAGATCTCTTGCTGCATGCGAACTATTGCAGAGAGCTGGCTATACGAAC CTTTTCTGGGTTCAAGGGGGGCTAGAGGCTGCAGAAGAAGAGGATCTTGTACGAGAAGGTCCCGTGCCTCTAAAGTTTGCTGGGATAGGTGGCGTTTCTG AATTCCTTGGGTGGACAGACCAACAAAGAGCTGCTGCAGCCAGAGAAGGGTGGGGATACCGGTTACTTTTCTCCGCTCGTCTGGTTGGACTGTTTATTGC TGCTGATGCATTATATATTGGGATTCAACAAGTGGGTCATTACATTCAAGAGATGAAGTCACATTAA
AA sequence Show only first row Show all	>Lus10019454 pacid=23181484 polypeptide=Lus10019454 locus=Lus10019454.g ID=Lus10019454.BGIv1.0 annot-version=v1.0 MGTLGLPSLNLLQLSHSPSNWQLSVKEVAMATPLKLSSAVKTSQNSRRSSVEIRAANEDLELKQMRDMAAAKKRWDVMIREGKVKMLTPREAGYAIQLSN KTLLDVRPSVEHEKAWVKGSTWIPMFEVDSNVDIGAISKKITSFAMGGWWSGMPTVSYNNQFLSKVEEKFPQDTDLIVACQKGLRSLAACELLQRAGYTN LFWVQGGLEAAEEEDLVREGPVPLKFAGIGGVSEFLGWTDQQRAAAAREGWGYRLLFSARLVGLFIAADALYIGIQQVGHYIQEMKSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24750			Rhodanese/Cell cycle control p...		Lus10019454 [exp]	0	1
AT2G33180			unknown protein		Lus10023686 [exp]	2.8	0.9506
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Lus10032000 [exp]	4.9	0.9182
AT1G01080			RNA-binding (RRM/RBD/RNP motif...		Lus10002676 [exp]	5.3	0.9149
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Lus10035171 [exp]	6.9	0.9256
AT1G01080			RNA-binding (RRM/RBD/RNP motif...		Lus10030194 [exp]	8.1	0.9274
AT2G35500		SKL2	shikimate kinase-like 2, shiki...		Lus10035389 [exp]	9.7	0.9160
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10034504 [exp]	12.6	0.8647
AT3G54210			Ribosomal protein L17 family p...		Lus10000382 [exp]	18.2	0.9159
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10025302 [exp]	20.6	0.9011
AT2G35500		SKL2	shikimate kinase-like 2, shiki...		Lus10030990 [exp]	21.9	0.9112

Compare expression of checked genes

Lus10019454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.