Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48270 439 / 2e-150 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G48280 437 / 9e-150 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G48310 435 / 9e-149 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G48290 431 / 2e-147 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2) AT3G48300 413 / 2e-140 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) AT3G48320 412 / 4e-140 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1) AT4G13310 394 / 9e-133 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT2G30770 392 / 1e-131 CYP71A13 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) AT2G30750 384 / 1e-128 CYP71A12 cytochrome P450, family 71, subfamily A, polypeptide 12 (.1) AT1G11610 383 / 2e-128 CYP71A18 "cytochrome P450, family 71, subfamily A, polypeptide 18", cytochrome P450, family 71, subfamily A, polypeptide 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043308 [exp] 837 / 0 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10017961 [exp] 581 / 0 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10041951 [exp] 560 / 0 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10029787 [exp] 390 / 4e-131 AT3G48310 407 / 7e-138 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Lus10008112 [exp] 387 / 1e-129 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10013150 [exp] 385 / 3e-129 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10016601 [exp] 384 / 1e-128 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10009903 [exp] 380 / 4e-127 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10030924 [exp] 379 / 2e-126 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085800 [exp] 583 / 0 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.012G089900 [exp] 429 / 3e-146 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.015G086000 [exp] 424 / 3e-144 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.012G090000 [exp] 423 / 5e-144 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.012G089600 [exp] 407 / 8e-138 AT3G48310 387 / 6e-130 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.016G137600 [exp] 402 / 9e-136 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.008G184000 [exp] 388 / 2e-130 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184400 [exp] 387 / 8e-130 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184900 [exp] 385 / 3e-129 AT3G26320 529 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.002G025800 [exp] 384 / 8e-129 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10019457 pacid=23181567 polypeptide=Lus10019457 locus=Lus10019457.g ID=Lus10019457.BGIv1.0 annot-version=v1.0 ATGTGGACGCAAGAGATCACTTCATCATTCGACCCCTGTGCAATCCTCTGTCTCCTCGGATTCCTCTTCTTCTCCAAATGGTTCTTGTCACCCAGAAAGA AGCTCCTCCTTCCTCCATCCCCTTTCAAGCTCCCAATTCTGGGAAACCTCCACCAACTAGGCTCCCACCCACACCGTTCCCTCCACTCCATGTCCCAAAC CCACGGCCCCATCATGCTCTTACACCTCGGCCAATCACCAACCCTCGTCATCTCCTCCCCTGAATCCGCTAGAGAGATTTTGAAAACCCACGACCTCGAT TTCGCCAACCGGACCGACTCCATCATCGCGAGGAGGCTCCTCTACAACTACAAGGACCTGTCCCTATCTCCCTACGGCGAGTATTGGAGGCAGATGAGGA GCATCTGCGTCATGCAGCTGCTCAGCGGGAAGAAGGTCCAGTCGTTCCGCCGCGTCAGAGAGGAAGAAGCCAGTTTGATGGTGGACCGGATTTTGGCGAA ACGGCAGCAGGCGGTGGATTTGGGGGAGGTGTTTGCAGTGCTGACTGAGGATGTTATATCCAGAGTGGCGTTTGGGAAGAAGTACAGGAAGCTGAAGGAG ATGCTGAAGGAGATGGCTGTTCTGTTGGGGATTTTCAATGTGGCTGATTTCGTGCCGTGGTTGGGATGGATTAACCGTTTCAACGGGTTGAATCGTAGAG TGGAGAGGGTGTTTGCTGAGTTCGATCAGTTTTTGGATGAAGTTGTTGATGAACATTTGGCCAGGAGGAGGCAGGGGAGTAGTGTGGAAGAACCGGAGGA GGAGGAGGAACAAAAGGATTTTGTTGATGTTTTGCTTGATGCACAGGCGGATAATGATCTTATGGATAGAGACAGCATCAAAGCCATCATTCTCGACATG TTCGGAGCGGGAAGCGACACAACATTCACAGCACTGGAATGGGCAATGACAGAGGTCCTCAAGCATCCAAGAGTCACCAACAAACTCCAGCAAGAGATCA GAAGCATAGTTGGTAACAACCCAACAGTAAAAGAAGATGACATAGATAGAATGCCATACTTAAAAGCTGTAATCAAGGAATCACTCCGCCTTCACCCTCC AATCCCGCTGCTGGTTCCAAGGGCATCAACAAAGGACACCAAAGTACTCGGCTACGACATTGCAGCCAAAACAGGGGTACTCATCAACGCCTGGGCAATC GGGAGGGACCCGACTGCTTGGGACGATCCTGCAGAGTTTAAGCCAGAGAGATTTACGGCGGGGACTAGTAGTGTGGTAGATTACAAGGGTCAGGATTTCC AGTTGATCCCTTTCGGTGCTGGAAGGAGGGGATGCCCTGGAATTACGTTTGCTGCTGCTGTACTGGAGATAGCCATGGCTGCTCTGCTTCACAAATTTGA CTGGTCGTTCCCTGGCGGAGCAAAGGCTGAGGATTTGGATGTGAGTGAGGCTCCTGGAATGGCTGTCCAGCGCAAATTTCCTCTTCTGGTTATTGCTACT CCCCACAAGTTTCAGGAATGA
AA sequence Show only first row Show all	>Lus10019457 pacid=23181567 polypeptide=Lus10019457 locus=Lus10019457.g ID=Lus10019457.BGIv1.0 annot-version=v1.0 MWTQEITSSFDPCAILCLLGFLFFSKWFLSPRKKLLLPPSPFKLPILGNLHQLGSHPHRSLHSMSQTHGPIMLLHLGQSPTLVISSPESAREILKTHDLD FANRTDSIIARRLLYNYKDLSLSPYGEYWRQMRSICVMQLLSGKKVQSFRRVREEEASLMVDRILAKRQQAVDLGEVFAVLTEDVISRVAFGKKYRKLKE MLKEMAVLLGIFNVADFVPWLGWINRFNGLNRRVERVFAEFDQFLDEVVDEHLARRRQGSSVEEPEEEEEQKDFVDVLLDAQADNDLMDRDSIKAIILDM FGAGSDTTFTALEWAMTEVLKHPRVTNKLQQEIRSIVGNNPTVKEDDIDRMPYLKAVIKESLRLHPPIPLLVPRASTKDTKVLGYDIAAKTGVLINAWAI GRDPTAWDDPAEFKPERFTAGTSSVVDYKGQDFQLIPFGAGRRGCPGITFAAAVLEIAMAALLHKFDWSFPGGAKAEDLDVSEAPGMAVQRKFPLLVIAT PHKFQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10019457 [exp]	0	1
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032641 [exp]	1.7	0.9711
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10004537 [exp]	2.0	0.9646
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10010992 [exp]	4.0	0.9480
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043313 [exp]	6.0	0.9582
					Lus10040377 [exp]	8.2	0.9344
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10023271 [exp]	8.5	0.9493
AT5G39150			RmlC-like cupins superfamily p...		Lus10033767 [exp]	9.4	0.9467
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10036194 [exp]	10.0	0.9495
					Lus10022008 [exp]	16.3	0.9483
					Lus10031841 [exp]	17.8	0.9512

Compare expression of checked genes

Lus10019457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.