Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48310 329 / 2e-107 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT4G13310 327 / 2e-106 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT2G30770 323 / 7e-105 CYP71A13 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) AT3G48290 321 / 2e-104 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2) AT3G48270 316 / 2e-102 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G48280 312 / 9e-101 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G48320 312 / 9e-101 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1) AT3G48300 310 / 3e-100 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) AT1G11610 310 / 7e-100 CYP71A18 "cytochrome P450, family 71, subfamily A, polypeptide 18", cytochrome P450, family 71, subfamily A, polypeptide 18 (.1.2) AT2G30750 310 / 7e-100 CYP71A12 cytochrome P450, family 71, subfamily A, polypeptide 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043313 [exp] 421 / 9e-143 AT3G48280 390 / 3e-131 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043310 [exp] 395 / 3e-134 AT2G30770 329 / 4e-109 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) Lus10029787 [exp] 363 / 1e-120 AT3G48310 407 / 7e-138 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Lus10024315 [exp] 331 / 6e-108 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10017961 [exp] 330 / 3e-107 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10019457 [exp] 321 / 4e-104 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10041951 [exp] 321 / 8e-104 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10030924 [exp] 318 / 7e-103 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10034502 [exp] 315 / 1e-102 AT4G31500 477 / 1e-166 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085600 [exp] 528 / 0 AT3G48270 378 / 1e-126 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.012G089600 [exp] 461 / 1e-158 AT3G48310 387 / 6e-130 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.016G137600 [exp] 425 / 1e-144 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.016G137400 [exp] 413 / 4e-141 AT3G48310 366 / 4e-123 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.015G085800 [exp] 343 / 9e-113 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.012G089900 [exp] 338 / 8e-111 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.012G090000 [exp] 333 / 1e-108 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.015G086000 [exp] 329 / 3e-107 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.002G025425 [exp] 322 / 2e-104 AT4G31500 520 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025350 [exp] 320 / 1e-103 AT4G31500 514 / 7e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10019459 pacid=23181476 polypeptide=Lus10019459 locus=Lus10019459.g ID=Lus10019459.BGIv1.0 annot-version=v1.0 ATGGATGCTCAACTGAGTATTTCCTTGCACCAGTTGTGGCAAACTGTGCAATATGATCACCAAATACTCCTTGTGTTTTCCCTTCTCCTTGTGCTCCCAT GTCTCTATCTTCTCCTCATGTTCTACAACACTCCAAAACTCAATCTCCCCCCTTCACCTCCCAAGCTTCCGATAATCGGAAACCTCCACCAGCTCAGCAT ACTCCTCCACCACTCCCTTCAGTCTCTTTCCCACAAGTACGGACCTGTAATGCTCATCCTCATGGGGAAAGCTCCAACCTTGGCTGTCTCATCTGCAGAT GCGGCTCGAGAGATTATGCAGAAGCATGACGTAAGTTTCTCATGTAGACCTCAAACAAGGGCCACCAACGCCTTGTTCTCGGGGTGCACTGACGTGGCGT TCTCTCCCTACAGCGAGTACTGGAGGGCAGTCAAGAAGATTTGCGTGCAGCAGCTTCTGAGCCAGAGGAGGGTCCAGGAATTCCAGTTCGTTAGGGAGGA GGAAGTTGCCGCTGTGGTTGAGATGATCCGTGTTAAGGGTGAGAAGAATCTCGCTGTTGATCTCAGCGAGATTCTTCTCACCCTTTCCAACAACATCATA TCAAGATCTGCTCTTGGTAAGGTGTATGAAGTTAATGGTTGTGAAAGGGAGCATAGTCTTGGGAGGTTGTCTAGGAAGGCAATTGATTTGATCAGTACCT TTTGCTTCAAGGACATGTTTAGGTTTCTGGGATGGATGGATTTCCTGACGGGTTTAGTTTCGAGTTTGAAGAGAACATCCAAAGCGTTACATGATGTGTT AGATCAAGTGATTGAAGAACATGTTCGAGTTCCTGGTGAGAAGAGAGATCTTGTGGATATATTACTCCAACTTCAGAGGGATGGCATGCTTGAGATTGAT CTTAGCAGAGAGAATCTTAGAGCAATACTCATGGACATGTTTGTAGGAGGAACAGACACAACATCGGCAGTCATGGAGTGGGCAATGTCACAACTTGTGA AGAACCCACCAATAATGAAGAAAGCCCAGGAAGAGATAAGGAAGGTGGTGGGAACCAAACAAAAAATCAAGGAAGCAGAGTTGAATCAGATGCCATACCT GAAATCCATCCTGAAAGAGACACTGAGGCTGCACGCTCCTGCAATGATCGCCAGGGAGACATCCGAGGCAGTGAAGCTTCAAGGATACGACATCCCGTCG AAGACCAGAGTGCTGGTGAATGCATGGGCGATTCAGAGGGATCCGACGACGTGGGGGGACGACGCTGGAGAGTTCATCCCGGAGAGGTTTGCAGGAGCGT CAAGAGTGGATTTTAAAGGTCAACACAGTGAGTTCATCCCGTTTGGGTTTGGGAGAAGGATGTGTCCTGGAATGGGATTCGCGGTTGCGGAAGCTGAGCT GGTTTTGGCAAACTTGCTGTGCTGGTTTGACTGGAGATTGCCCGATGGGGAAATTGCAGGGGATTTGGATTTGAGCGAGACCAATGCTTTGATTGTGCAC AAGAAAAAGCCGCTCGTTTTGATTCCCAATTGTGCATTATGA
AA sequence Show only first row Show all	>Lus10019459 pacid=23181476 polypeptide=Lus10019459 locus=Lus10019459.g ID=Lus10019459.BGIv1.0 annot-version=v1.0 MDAQLSISLHQLWQTVQYDHQILLVFSLLLVLPCLYLLLMFYNTPKLNLPPSPPKLPIIGNLHQLSILLHHSLQSLSHKYGPVMLILMGKAPTLAVSSAD AAREIMQKHDVSFSCRPQTRATNALFSGCTDVAFSPYSEYWRAVKKICVQQLLSQRRVQEFQFVREEEVAAVVEMIRVKGEKNLAVDLSEILLTLSNNII SRSALGKVYEVNGCEREHSLGRLSRKAIDLISTFCFKDMFRFLGWMDFLTGLVSSLKRTSKALHDVLDQVIEEHVRVPGEKRDLVDILLQLQRDGMLEID LSRENLRAILMDMFVGGTDTTSAVMEWAMSQLVKNPPIMKKAQEEIRKVVGTKQKIKEAELNQMPYLKSILKETLRLHAPAMIARETSEAVKLQGYDIPS KTRVLVNAWAIQRDPTTWGDDAGEFIPERFAGASRVDFKGQHSEFIPFGFGRRMCPGMGFAVAEAELVLANLLCWFDWRLPDGEIAGDLDLSETNALIVH KKKPLVLIPNCAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30770		CYP71A13	cytochrome P450, family 71, su...		Lus10019459 [exp]	0	1
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033633 [exp]	2.6	0.9927
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10034626 [exp]	4.5	0.9896
					Lus10014508 [exp]	5.3	0.9917
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10019460 [exp]	7.3	0.9908
AT4G08250	GRAS		GRAS family transcription fact...		Lus10028056 [exp]	8.4	0.9851
AT5G43440			2-oxoglutarate (2OG) and Fe(II...		Lus10022192 [exp]	10.1	0.9882
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10030708 [exp]	10.5	0.9816
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025902 [exp]	10.7	0.9891
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021455 [exp]	12.0	0.9852
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028898 [exp]	12.6	0.9874

Compare expression of checked genes

Lus10019459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.