Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26230 257 / 8e-83 CYP71B24 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) AT1G13080 239 / 2e-77 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT2G30770 234 / 7e-74 CYP71A13 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) AT3G26270 233 / 1e-73 CYP71B25 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) AT3G26320 232 / 3e-73 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G26330 228 / 1e-71 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT5G25180 228 / 1e-71 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT5G25120 228 / 2e-71 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT3G48270 227 / 3e-71 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G26300 227 / 4e-71 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043312 [exp] 415 / 7e-149 AT1G13080 229 / 2e-74 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Lus10019459 [exp] 302 / 5e-100 AT2G30770 409 / 3e-138 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) Lus10043313 [exp] 288 / 1e-94 AT3G48280 390 / 3e-131 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10029787 [exp] 266 / 4e-86 AT3G48310 407 / 7e-138 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Lus10019463 [exp] 253 / 2e-84 AT3G26270 217 / 1e-67 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) Lus10043310 [exp] 257 / 1e-83 AT2G30770 329 / 4e-109 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) Lus10012767 [exp] 257 / 2e-82 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10016601 [exp] 256 / 3e-82 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10038796 [exp] 254 / 2e-81 AT3G26300 364 / 5e-121 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085600 [exp] 322 / 8e-108 AT3G48270 378 / 1e-126 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.012G089600 [exp] 322 / 9e-108 AT3G48310 387 / 6e-130 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.016G137400 [exp] 295 / 3e-98 AT3G48310 366 / 4e-123 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.016G137600 [exp] 289 / 6e-95 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.015G085800 [exp] 256 / 5e-82 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.015G086000 [exp] 253 / 3e-81 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.012G089900 [exp] 253 / 4e-81 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.012G090000 [exp] 249 / 1e-79 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.002G025300 [exp] 241 / 1e-76 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.001G364900 [exp] 234 / 9e-76 AT3G26300 228 / 1e-70 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10019461 pacid=23181468 polypeptide=Lus10019461 locus=Lus10019461.g ID=Lus10019461.BGIv1.0 annot-version=v1.0 ATGGATACGCTGAGGGGATTTAATGCAAAAGTTCATAAGGCGTCCAAGGCTCTTCATGTATTTCTGGATAAAGTGATTGAAGAACATGAGGCTGCTGATA GTAAGGAAGGGTCGAATAGTGTTGGGTCGGCTGATCGGAAGGACATCATCGACATTCTTCTGCAGTTGGAGAGGGAAGGAAAGCTTGGGATCAATCTCAC TCGCAACAACATGAAAGCCGTCGTCATGGACATGTTTATTGGAGGAACAGACACGACAGCATCGACGATGGACTGGGCAATGGCCGAGATGATGAAGAAC CCAACCATTCTAAAGAAAGCTCAAGAAGAGGTAAGGAAAGTGGTGGGGAAGAAACCCAAAGTGGAAGAGAGCGACCTAGACAACTTGAGCTACTTGAAAT GTGTGATCAAGGAGACACTAAGGCTCCATGTGTCCGGGATCATCCCCAGGCAGACCACAAGCGCGGTGAAACTCAACGGCTATGACATCCCTGCGAACAC GAGGGTGTTGATAAACACATGGGCGATCCAAAGGGATGAGAAGCAGTGGGAGAGGCCCGAGGAGTTTGATCCGGAGAGATTCGTAGGGAGCGAGCTCGAT TTCAGAGGGCAACATAAGGAGTACCTTCCGTTCGGTACTGGGAGGAGGATATGCCCCGGGATTTCGTATGCATTGAAGGAGGTTGAGTATGTGGTGGCCA ATTTGATATACAAGTTCGATTGGGGAGTTGGAGGTGGTGGGCGTGGGGAGGATTTGGATATGACTGATAATTTTGATATGGTCATCCGTAGGAAGATGCC TCTTGTTCTTCTCCCCACACTTCATCACTTCTCAGAGTAA
AA sequence Show only first row Show all	>Lus10019461 pacid=23181468 polypeptide=Lus10019461 locus=Lus10019461.g ID=Lus10019461.BGIv1.0 annot-version=v1.0 MDTLRGFNAKVHKASKALHVFLDKVIEEHEAADSKEGSNSVGSADRKDIIDILLQLEREGKLGINLTRNNMKAVVMDMFIGGTDTTASTMDWAMAEMMKN PTILKKAQEEVRKVVGKKPKVEESDLDNLSYLKCVIKETLRLHVSGIIPRQTTSAVKLNGYDIPANTRVLINTWAIQRDEKQWERPEEFDPERFVGSELD FRGQHKEYLPFGTGRRICPGISYALKEVEYVVANLIYKFDWGVGGGGRGEDLDMTDNFDMVIRRKMPLVLLPTLHHFSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Lus10019461 [exp]	0	1
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10019460 [exp]	1.0	0.9979
					Lus10014508 [exp]	2.0	0.9950
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008917 [exp]	2.2	0.9940
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033633 [exp]	3.5	0.9943
					Lus10005629 [exp]	3.7	0.9939
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10006984 [exp]	4.2	0.9940
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10024120 [exp]	4.9	0.9939
AT4G23690			Disease resistance-responsive ...		Lus10024715 [exp]	5.3	0.9918
					Lus10032178 [exp]	5.7	0.9941
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10005858 [exp]	6.3	0.9937

Compare expression of checked genes

Lus10019461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.