Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48310 141 / 4e-39 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT1G11610 139 / 2e-38 CYP71A18 "cytochrome P450, family 71, subfamily A, polypeptide 18", cytochrome P450, family 71, subfamily A, polypeptide 18 (.1.2) AT3G48290 137 / 1e-37 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2) AT3G48320 136 / 2e-37 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1) AT2G30770 135 / 1e-36 CYP71A13 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) AT3G26330 134 / 3e-36 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT4G13310 132 / 3e-36 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT5G57260 133 / 4e-36 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT5G24950 131 / 2e-35 CYP71A15 "cytochrome P450, family 71, subfamily A, polypeptide 15", cytochrome P450, family 71, subfamily A, polypeptide 15 (.1) AT3G48280 127 / 7e-34 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043313 [exp] 400 / 6e-139 AT3G48280 390 / 3e-131 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10019459 [exp] 179 / 2e-53 AT2G30770 409 / 3e-138 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) Lus10043310 [exp] 140 / 2e-39 AT2G30770 329 / 4e-109 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) Lus10029787 [exp] 137 / 9e-38 AT3G48310 407 / 7e-138 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Lus10019157 [exp] 133 / 5e-36 AT3G48300 358 / 1e-118 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) Lus10009903 [exp] 130 / 4e-35 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10041951 [exp] 128 / 5e-34 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10030530 [exp] 125 / 5e-34 AT3G48310 191 / 1e-56 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Lus10043308 [exp] 127 / 1e-33 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G089600 [exp] 187 / 4e-56 AT3G48310 387 / 6e-130 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.015G085600 [exp] 180 / 1e-53 AT3G48270 378 / 1e-126 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.016G137600 [exp] 146 / 6e-41 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.012G090000 [exp] 137 / 2e-37 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.015G085800 [exp] 135 / 1e-36 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.012G089900 [exp] 133 / 3e-36 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.005G236102 [exp] 128 / 2e-35 AT4G31500 242 / 3e-76 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.015G086000 [exp] 130 / 3e-35 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.002G025350 [exp] 129 / 1e-34 AT4G31500 514 / 7e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.007G084800 [exp] 127 / 4e-34 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10019462 pacid=23181553 polypeptide=Lus10019462 locus=Lus10019462.g ID=Lus10019462.BGIv1.0 annot-version=v1.0 ATGTCGTATGAACTCTTATTGACCGCTGCTTCAATCCTTCTCTTCTCAGGATTTATCCATCTACTCAGAAAGATGAACGGAAAGAGCAAGCTAAACTTGC CGCCATCTCCACCATCTCTGCCACTAATAGGAAACCTCTTCCAAATCAGCAAGCTTCCTTACCGTTCCCTCCGCGCGCTCTCCACTCACTACGGTCCCCT GATGCTCGTCAAGCTCGGCAGCATTCCGTACGTCATCGTCTCGTCGGCCGACGCCATCCAAGAGCTCACCGACAAGGACCACGACGTCATCTTCTCAGGC AGGCCGCAGTGGAAGTCGTCGGACGCGCTCTTCGGTGGGAGCACCGACATAATCTTCTCTTCCTTCGGGGGGTACTGGCGGGGGATGAAGAGGATATGCA TGCTGGAAGTGCTGAGCCAGAGGAGGGTGAATCAGTTCCGCAACATCCGGGAGCAAGAGGTCGAACACATGGTGGGCATTCTGAAAGTCGCGTCGAAAGA GCGAAATGCTGTCGATTTAAGCGATGCGATCTCTACTTTCACGAATACGGTGATCTCGAGGGCCGCTTTTGGGAAGACTTACCAGAAAATTAACGGTGGG AATGCAGAGGAGAAGAATTTTGTGCCGCTGTTGAGGAGGGCGGTGGATGTATTGGCGGAGTTTTGCTTCAAGGATTCGTTCCCGTATTTGGGATGGGTTG CACAATGGGTTTGA
AA sequence Show only first row Show all	>Lus10019462 pacid=23181553 polypeptide=Lus10019462 locus=Lus10019462.g ID=Lus10019462.BGIv1.0 annot-version=v1.0 MSYELLLTAASILLFSGFIHLLRKMNGKSKLNLPPSPPSLPLIGNLFQISKLPYRSLRALSTHYGPLMLVKLGSIPYVIVSSADAIQELTDKDHDVIFSG RPQWKSSDALFGGSTDIIFSSFGGYWRGMKRICMLEVLSQRRVNQFRNIREQEVEHMVGILKVASKERNAVDLSDAISTFTNTVISRAAFGKTYQKINGG NAEEKNFVPLLRRAVDVLAEFCFKDSFPYLGWVAQWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10019462 [exp]	0	1
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10019463 [exp]	1.4	0.9871
AT4G16260			Glycosyl hydrolase superfamily...		Lus10016883 [exp]	2.8	0.9763
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10024511 [exp]	4.2	0.9634
AT4G16260			Glycosyl hydrolase superfamily...		Lus10037749 [exp]	4.5	0.9610
AT2G41480			Peroxidase superfamily protein...		Lus10020826 [exp]	4.9	0.9583
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043313 [exp]	6.3	0.9633
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10019183 [exp]	6.5	0.9549
AT1G78860			D-mannose binding lectin prote...		Lus10022495 [exp]	6.6	0.9323
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004785 [exp]	11.4	0.9301
AT4G12545			Bifunctional inhibitor/lipid-t...		Lus10024624 [exp]	13.0	0.9204

Compare expression of checked genes

Lus10019462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.