Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25140 202 / 6e-62 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT3G26270 202 / 7e-62 CYP71B25 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) AT3G26210 201 / 1e-61 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT3G26230 200 / 3e-61 CYP71B24 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) AT3G26280 200 / 4e-61 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT1G13110 199 / 7e-61 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT5G25180 198 / 1e-60 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT5G25120 197 / 5e-60 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT1G13080 191 / 4e-59 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT2G45560 193 / 3e-58 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043313 [exp] 462 / 3e-163 AT3G48280 390 / 3e-131 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10019459 [exp] 254 / 7e-82 AT2G30770 409 / 3e-138 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) Lus10029787 [exp] 243 / 1e-77 AT3G48310 407 / 7e-138 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Lus10043310 [exp] 239 / 4e-77 AT2G30770 329 / 4e-109 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) Lus10019461 [exp] 233 / 2e-76 AT3G26230 258 / 3e-83 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) Lus10016601 [exp] 219 / 3e-68 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10043312 [exp] 208 / 8e-68 AT1G13080 229 / 2e-74 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Lus10016599 [exp] 217 / 2e-67 AT3G26330 395 / 7e-133 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10030924 [exp] 216 / 7e-67 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G089600 [exp] 261 / 9e-85 AT3G48310 387 / 6e-130 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.015G085600 [exp] 248 / 9e-80 AT3G48270 378 / 1e-126 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.016G137600 [exp] 238 / 1e-75 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.016G137400 [exp] 235 / 2e-75 AT3G48310 366 / 4e-123 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.008G184900 [exp] 218 / 4e-68 AT3G26320 529 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184000 [exp] 218 / 7e-68 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G223500 [exp] 216 / 2e-67 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G184400 [exp] 214 / 2e-66 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.007G075000 [exp] 210 / 6e-65 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.015G085800 [exp] 210 / 7e-65 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10019463 pacid=23181489 polypeptide=Lus10019463 locus=Lus10019463.g ID=Lus10019463.BGIv1.0 annot-version=v1.0 ATGGAGAGTGTTGAGGATGATGGTGATGAAAAGGTGTCTGCAGAGAGGCAGCTGGATATTGTTGATATTCTGCTGCGTGTTCAGAAGGAAAGGGAGCTTG AATTTCATTTCACTGATGCAAACATTAAAGCTACTCTCTTGGACATGTTTGCAGGAGGAACCGACACAATCGCAACGACATTGGAATGGGTGATGTCGGA GCTAATAAAACATCCATCGATGATGAAGAGAGCACAGGAAGAGGTAAGGAAGGCAGTTGCGCACAAGTCCAGAATAGATGAAGCTGACATGAACCAGATG GTGTACCTGAAATGCATCATCAAGGAGACACTCAGGCTACACGCTCCGGCTCCAGTCTCGCTACGCAAGACATCGGAAGCAGTCAAGCTGAAAGGCTACG ACATCCCACAGGGAATGATGGTGATGATCAACTTGTGGGCGGTAATGAGGGACCCTGAGGTCTGGGACACCCCTGAGGAGTTTGTTCCTGACAGGTTTCT GAACGACCCCATCGATTTCAAGGGCCAGACGGGGAAGTTCGTCCCTTTTGGTGCTGGGAGGAGACTGTGTCCCGGGATGACCTTGGCGCTGGTGGAAGTT GAGCTTGTGGCTGCTAACTTGCTGTGTTGGTTCGATTGGGAGCTACCTCAGGGAGTGGCTGATTTGGATATGAGTGAGATCAACTCTGTTGTTCTTCGTA GGGAGAATCCTCTTTGTCTAGTTCCAGTTCTGACGCAACAAAACGTTGAATAG
AA sequence Show only first row Show all	>Lus10019463 pacid=23181489 polypeptide=Lus10019463 locus=Lus10019463.g ID=Lus10019463.BGIv1.0 annot-version=v1.0 MESVEDDGDEKVSAERQLDIVDILLRVQKERELEFHFTDANIKATLLDMFAGGTDTIATTLEWVMSELIKHPSMMKRAQEEVRKAVAHKSRIDEADMNQM VYLKCIIKETLRLHAPAPVSLRKTSEAVKLKGYDIPQGMMVMINLWAVMRDPEVWDTPEEFVPDRFLNDPIDFKGQTGKFVPFGAGRRLCPGMTLALVEV ELVAANLLCWFDWELPQGVADLDMSEINSVVLRRENPLCLVPVLTQQNVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10019463 [exp]	0	1
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043313 [exp]	1.0	0.9878
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10019462 [exp]	1.4	0.9871
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10024511 [exp]	1.7	0.9862
AT4G16260			Glycosyl hydrolase superfamily...		Lus10016883 [exp]	2.0	0.9816
AT4G16260			Glycosyl hydrolase superfamily...		Lus10037749 [exp]	3.5	0.9625
AT2G41480			Peroxidase superfamily protein...		Lus10020826 [exp]	3.7	0.9615
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10019183 [exp]	6.0	0.9598
AT1G17860			Kunitz family trypsin and prot...		Lus10011090 [exp]	6.7	0.9639
AT1G78860			D-mannose binding lectin prote...		Lus10022495 [exp]	8.1	0.9339
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013332 [exp]	8.8	0.9522

Compare expression of checked genes

Lus10019463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.