Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50210 993 / 0 SUFE3, OLD5, QS SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) AT1G67810 189 / 5e-55 SUFE2 sulfur E2 (.1) AT4G26500 77 / 1e-14 SUFE1, EMB1374, CPSUFE, ATSUFE SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043314 [exp] 1367 / 0 AT5G50210 1020 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Lus10006468 [exp] 164 / 4e-46 AT1G67810 189 / 1e-59 sulfur E2 (.1) Lus10011408 [exp] 145 / 2e-39 AT1G67810 167 / 3e-51 sulfur E2 (.1) Lus10032905 [exp] 74 / 7e-14 AT4G26500 380 / 4e-131 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10015605 [exp] 73 / 2e-13 AT4G26500 387 / 2e-133 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085300 [exp] 1036 / 0 AT5G50210 989 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Potri.012G089500 [exp] 402 / 1e-134 AT5G50210 401 / 1e-134 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Potri.001G468300 [exp] 80 / 8e-16 AT4G26500 392 / 5e-136 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Potri.011G165400 [exp] 76 / 2e-14 AT4G26500 404 / 1e-140 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Potri.005G112150 [exp] 52 / 5e-08 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02445 [flax] [poplar] NadA Quinolinate synthetase A protein CL0233 [flax] [poplar] SufE_NifU PF02657 [flax] [poplar] SufE Fe-S metabolism associated domain
Representative CDS sequence Show only first row Show all	>Lus10019464 pacid=23181604 polypeptide=Lus10019464 locus=Lus10019464.g ID=Lus10019464.BGIv1.0 annot-version=v1.0 ATGGAATACTCTGTGTCCATGAAAGCTTCATCCTTTTCTCGTTTACTTCCCTCTTTCTCCTCTAATTCCCGTTATGGGTCGTCCCAGAAACTCTGCGTCT CCAACAGACATTCGTCTCTGTCTCACAATCCGTCGCCTTTCCTCAAATCCCTCAAGCTCATTCAATCTCATTCTCGGGATGCGAAACCCCGTGCTTCCCC TTCCGGCGTCGTTTTGCGTTCGTCTCCCACCTCCGAGCTGGAGTCAGGTAAGCTCCAGCAACTCATTTCTGAATTCGGATCACTTGACGAACCGGCCGAC AGGATCAAGCTGCTGATGGGTTACGCCGCCTTGCTCCCTCCATTTCCTGACGCGTCCCGGGTCGGGTCGAACCGCGTCATGGGTTGCACCGCCCGGGTTT GGTTGGATGCGGCGATGGACGAGAACGGGAAGATGAAGTTTTTGGCCGACAGTGATTCGGAGATCACGCGAGGGTTTTGCGGATGCTTGATCTGGCTACT CGACGGGGCGGCGCCCGAGGAGGTGTTGAGTATCAAGACGGAGGATTTGGCGGCGTTGAATGTAGGGATGACCGGCGCTCAGAGGTCGAGAGTGAATACT TGGCATAATGTTCTGGTTAGTATGCAGAAGAGAACCAAGAAATTTTTGGCCGAAATTGAAGGCAAATTGTTTCAGCCTTTCCCGTCGTTGATGGTTACCT CTCACGGGATTCAAGCCCATGGAAGCTATGCTGAAGCTCAGGCCACATATTTGTTCCCGGATGAGTTGAAGGTTCAGCAACTTGTTAAGGTGCTGAAAGA GAAGCAAATCGGAGTAGTGGCACATTTTTACATGGACCCTGAAGTTCAAGGTGTCCTTACTGCCGCACAGAAGCATTGGCCTCACATACATATATCTGAT TCTCTGGTAATGGCGGATAGTGCTGTAAAGATGGCAGAAGGTGGATGCAAATTCATAACAGTCCTTGGTGTTGATTTCATGTCCGAAAACGTCCGGGCTA TCCTTGATCAGGCTGGATACCGAAATGTTGGTGTATATAGGATGTCTGATGAGCAAATTAGCTGTTCGTTGGCAGATGCTGCATCTGCCCCTGCATATAT GAATTATCTTGAGGAGGCTTCCAAGTCTCCTCCATCTCTGCATGTTATCTATATAAATACCTCGCTTGAGACCAAAGCTTATACTCACGAACTCGTGCCT ACGATCACATGTACTTCTTCCAATGTCGTTCAAACCGTATTGCAAGCCTTCTCTGAAATTCCAGATTTGAAGATATGGTATGGCCCTGATTCTTACATGG GTGCTAACATAGCAAAACTGTTCCAGCAAATGACAATGATGACTGATGAAGAAATCGCTGACATACACCCTGCACATACTGCAGACACCATTAGATCATT TCTTCCTCACCTGCATTACTACCAGGATGGATCATGCATTGTTCACGATCTTTTCGGACACGAAGTTGTACAGAAGATAAGCGAAATGTACGGTGATGCT TTCTTGACTGCTCATCTCGAGGTTCCGGGAGAAATGTTTTCTTTAGCAATGGATGCAAAGAAGAGAGGAATGGGGGTAGTAGGATCCACACAAAACATAC TAGACTTCATAAAACAGAGAGTCCAAGAAGCTCTAGATAGAAATGTGAGTGATCATCTCCAATTCGTGTTGGGCACAGAGTCTGGAATGGTGACTGCTAT AGTTGCAGCAGTCCGGCAGCTACTCGACTCCTCAACATCTTCCGAGAAAGCAAATATCGTAGTCGAGATTGTCTTCCCCGTATCGTCTGACTCAATAACC AAAACACAAACCAGTTCACCCCTGGATTCGAACTCAGTCACACTTGGAGATGTTGTATTACCTGTAGTACCTGGTGCTGCCAGTGGCGAGGGATGTTCTT TACATGGTGGATGTGCGTCCTGTCCGTATATGAAGATGAATTCTCTCAACTCTCTACTGAAAGTATGCCATCAATTGCCGGATAGGGAGAACATGCTAGC CCCTTATCAAGCTGAACGCTTTAAGACACAGACGCCAGGAGGGAAAGATATAGCAGATATTGGTTGTGAACCGATATTGCATATGAGATACTTCCAGGCT AAAAAGCAAATGTCGGAGAAGCTCGTTCATCAGATCCTACATCAGAATGGCAATGGCAGATCGTGA
AA sequence Show only first row Show all	>Lus10019464 pacid=23181604 polypeptide=Lus10019464 locus=Lus10019464.g ID=Lus10019464.BGIv1.0 annot-version=v1.0 MEYSVSMKASSFSRLLPSFSSNSRYGSSQKLCVSNRHSSLSHNPSPFLKSLKLIQSHSRDAKPRASPSGVVLRSSPTSELESGKLQQLISEFGSLDEPAD RIKLLMGYAALLPPFPDASRVGSNRVMGCTARVWLDAAMDENGKMKFLADSDSEITRGFCGCLIWLLDGAAPEEVLSIKTEDLAALNVGMTGAQRSRVNT WHNVLVSMQKRTKKFLAEIEGKLFQPFPSLMVTSHGIQAHGSYAEAQATYLFPDELKVQQLVKVLKEKQIGVVAHFYMDPEVQGVLTAAQKHWPHIHISD SLVMADSAVKMAEGGCKFITVLGVDFMSENVRAILDQAGYRNVGVYRMSDEQISCSLADAASAPAYMNYLEEASKSPPSLHVIYINTSLETKAYTHELVP TITCTSSNVVQTVLQAFSEIPDLKIWYGPDSYMGANIAKLFQQMTMMTDEEIADIHPAHTADTIRSFLPHLHYYQDGSCIVHDLFGHEVVQKISEMYGDA FLTAHLEVPGEMFSLAMDAKKRGMGVVGSTQNILDFIKQRVQEALDRNVSDHLQFVLGTESGMVTAIVAAVRQLLDSSTSSEKANIVVEIVFPVSSDSIT KTQTSSPLDSNSVTLGDVVLPVVPGAASGEGCSLHGGCASCPYMKMNSLNSLLKVCHQLPDRENMLAPYQAERFKTQTPGGKDIADIGCEPILHMRYFQA KKQMSEKLVHQILHQNGNGRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Lus10019464 [exp]	0	1
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10027817 [exp]	1.4	0.8316
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10014836 [exp]	2.0	0.8157
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10028677 [exp]	4.6	0.7282
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10005111 [exp]	6.0	0.7639
AT2G47390			Prolyl oligopeptidase family p...		Lus10010007 [exp]	8.5	0.7341
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10005045 [exp]	9.4	0.7575
AT3G16560			Protein phosphatase 2C family ...		Lus10004793 [exp]	9.8	0.7248
AT4G31010			RNA-binding CRS1 / YhbY (CRM) ...		Lus10041383 [exp]	13.3	0.6985
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10007319 [exp]	14.4	0.6948
AT2G40570			initiator tRNA phosphoribosyl ...		Lus10012958 [exp]	18.7	0.6683

Compare expression of checked genes

Lus10019464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.