Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24730 444 / 4e-158 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043315 [exp] 492 / 3e-177 AT4G24730 373 / 3e-130 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G089400 [exp] 494 / 1e-177 AT4G24730 440 / 2e-156 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4) Potri.015G085232 [exp] 198 / 1e-63 AT4G24730 177 / 4e-56 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10019465 pacid=23181548 polypeptide=Lus10019465 locus=Lus10019465.g ID=Lus10019465.BGIv1.0 annot-version=v1.0 ATGGCGTCTAAGCCTTTGTTTTCATTTGGGGTTATAGCTGATGTGCAGTATGCTGATCTCCCTGATGGCCATTCATTCCTTGGCGTCCCTCGCTACTATC GGCACAGCATCAATGTGCTTCAAAGAGCGGTACAGAAGTGGAACCAGCGGCAAAACCTAATGTTCGTGATGAATTTTGGTGATATTGTTGATGGGACTTG CCCCAAAGACCAGTCACTAGATTCTGTCAAGAAAGTAGTTTCTCAATTCGAGAAATTCAACGGTTCTGTTTATCATATGATTGGCAATCACTGCCTTTAC AATCTTCCCCGTGAAGAATTGCTTCCATTACTCAAGATTCGGAGCTCCGATTTGCATGCATACTACGACTTCTCACCTGTCCCAGAGTTTAGATTCGTGG TGCTGGATGGTTATGATGTTAGCGCTATCGGCTGGTCCGAAGATAATCCAAAGACACTGCAAGCGTTAGAACTTCTCAAGACGAAGAATCCGAATTCGGA TAAGAACAGCCCCGAAGGACTGGTGGGTGTTGAGAGAAGGTTCCTTAAGTACAATGGAGCTGTTGGGAGAGAACAACTTGAATGGTTAGATGGTGTTCTC CAGGATGCAACAAAACTGAAGCAGAAAGTAATTATCTGCTGTCATATACCTTTGGACCCTGGCGTGTCGTTTCCGGGATCTCTTCTTTGGAACTATGATG AGGTCATGGATTTGGTACACAAGCATAGTTGTGTAAAGGTTTGCCTTTCCGGACATGATCACAACGGTGGATACTCCATCGACTCCCATGGGATACACCA TAGGTCCCTTGAGGCTGCTCTGGAATGTCCTCCTGGTACTGATGCATTTGGTAGTGTTGATGTTTATGATAACAGGTTTGTTCTCTCTGGTACTGATAGG ATGCCAAGTACAGAAATGGTTTTCACCCCTTAA
AA sequence Show only first row Show all	>Lus10019465 pacid=23181548 polypeptide=Lus10019465 locus=Lus10019465.g ID=Lus10019465.BGIv1.0 annot-version=v1.0 MASKPLFSFGVIADVQYADLPDGHSFLGVPRYYRHSINVLQRAVQKWNQRQNLMFVMNFGDIVDGTCPKDQSLDSVKKVVSQFEKFNGSVYHMIGNHCLY NLPREELLPLLKIRSSDLHAYYDFSPVPEFRFVVLDGYDVSAIGWSEDNPKTLQALELLKTKNPNSDKNSPEGLVGVERRFLKYNGAVGREQLEWLDGVL QDATKLKQKVIICCHIPLDPGVSFPGSLLWNYDEVMDLVHKHSCVKVCLSGHDHNGGYSIDSHGIHHRSLEAALECPPGTDAFGSVDVYDNRFVLSGTDR MPSTEMVFTP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24730			Calcineurin-like metallo-phosp...		Lus10019465 [exp]	0	1
AT5G57370			unknown protein		Lus10006974 [exp]	2.0	0.9116
AT5G57370			unknown protein		Lus10001311 [exp]	2.2	0.9216
AT3G12620			Protein phosphatase 2C family ...		Lus10001976 [exp]	6.0	0.8879
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10009942 [exp]	8.0	0.8737
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10008727 [exp]	11.5	0.8591
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10018426 [exp]	12.0	0.8485
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10027641 [exp]	16.4	0.8338
AT2G41945			unknown protein		Lus10021080 [exp]	19.5	0.8840
AT1G01290		CNX3	cofactor of nitrate reductase ...		Lus10036661 [exp]	25.3	0.8821
AT1G11320			unknown protein		Lus10017280 [exp]	26.6	0.8905

Compare expression of checked genes

Lus10019465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.