Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043316 [exp] 1025 / 0 ND / Lus10017959 [exp] 198 / 8e-59 ND / Lus10041949 [exp] 192 / 1e-55 ND / Lus10008068 [exp] 54 / 2e-07 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G084300 [exp] 562 / 0 ND / Potri.011G153800 [exp] 47 / 2e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019466 pacid=23181591 polypeptide=Lus10019466 locus=Lus10019466.g ID=Lus10019466.BGIv1.0 annot-version=v1.0 ATGGATCGGGCGAGATTCACACGAGGATCGGCGGCCGCGACAGGGCAATCGATGGCCGCCGTGGTCCACAACAAGAAGAAATCAGCAGCCGGTCATCCTT CGCCGGACCTGACAGATTTCATGAACGACATGTTCTTCGGAACCATCAGTTCTGATAACAATAAGTCTTACAACCTGACAGGGAATAGTAATAACAAGAA TGGTAGGTGGGAAGAAGAGGAGCAAGGCGGTTTCGATGACAGCATGAGGAGCGACAGCAGCAAGCTGACGCAGGAGTGGCTCCACGAGGCTAGGAGGATG GTTGCTTCTTCTCCTTCCCGCGGCGGTTTCGATTCCCCTGCTGCAGCTGCGCCGGTGAAGCTTGTTGGGGCTCCCAGGTTCGCCAACGCCAGGCTTTCCA CCGGCTCCGCTCTTGATCGTAGGGATCCTCTTTCCAGATCCGCCAGAAGGAACAGAGCAACGGAAGGGTTCAGTGAAGAGATCCTGACGCGATCGGCGAG GCACACTCGCAACGGCTCCATCTCGTCGGAGCAATCAGCAGAAACATCCCCGGCATCGCAAGTCCACAAATGGATTTCCAAAAACATCAAACCCCCAAAT GGCTCCTCGCCTGAATACCAATTCTCCAACAACAACAACGCTGCTCTCGTCTACCCATCTAACGAATCATCCGGGCTTCCTCCGCCGCCGCGGCAATCCA CACACCACCGGAGGTCCCGCTTCCAAGCCGAATCTCCGACATCTCATCCTCCTCGATCTTCTTCTTCGCCGGCTCAGGATATTCCCAGAAGGTTCAAGCA CCAACACGGCCATGCTGCTGGTCCTCCGCCGCCGCCGCGTTCCGGTCAGGTGCTCTCGCCGCCCAAGAATCTCGTTGAGTCGGCTCACAGGAGGTCCATC TCTAAGTCCACTTGTTCCATTGAGAAAATAGCTCCCAATCAGGTTGCGCATGGAGATGAAGCTTTAGGAGGACAAGAAGTTAGTCTGAATGGGTTCCTGA AGAAACAGAGGGTTAAAGCTGAACAGATCATGAACAAAGAGATCGATGGCAAGGCTAAGATCATCCTCTCTGGCCCTTCTAACAGTACAAGTTCAATGGT GGCAGCAATTTGCTATGCTTGGTTGTTGGAGAACAGGGTATTGAAGAATAACAAGGAAGATGCCGATACTCCATACGTAGTGGTGCCAGTAATGAACGTT AGGAGAGGGAGGATGTGGAAGCAGAGGCAAGCTGCTTGGCTGTTCCACCATGTTGGCCTTGATTGCAAATCACTGCTTTTTGCTGAGGAGGTCGACTTTG AGAATCTAATGATGTCAGGACAACTGAACATCCTTGTGGTTGGCCAAGACATACTCCGAACTAACGGCGAGGTTGGGTCTCAATGCACAATTCTGACAGA CAACTACTGTGAAGATGCTTATGACTTGCTAGAATTCCAGATGCTGAAAAAGCTTTTGCTTGCAGGGATCTTATTAGACACGCAGAATCTAAATTCAGCA GTTGAGTTGTCGACGACAAGAGATTCGGAGGCAGTACAGTTGCTCCTAGCTGGCTCGCCTCCAAACTACCGGACTACCATCTATGACCAATTGGTGCAAG ATCAGAAAGACCACGCCTTTTTCGAAGCATTACGGCGTTACTATGGAAAGCCTCCCAGCAGCGAGAGTGGAAGAACGGAGAAAAATTCGAGCAACTCGAG CCAAACTGAATCCAATACGACAACCAAAGGGGATCCTTCAAGAACAGCAAAACAAAATAGTAGTGGAGGTTCGCGGAAGGCAGCAGCACCAACAGCAGCA GGAGCGATCGTGAAAGTGCAGGCTCAGCAGCCTAATAACAGCGATTCGTCTCGCGGAAAGAACAAGAACTTCCTCTCGAAGTGGTTCGGTTTCGGAGGAA AGTAA
AA sequence Show only first row Show all	>Lus10019466 pacid=23181591 polypeptide=Lus10019466 locus=Lus10019466.g ID=Lus10019466.BGIv1.0 annot-version=v1.0 MDRARFTRGSAAATGQSMAAVVHNKKKSAAGHPSPDLTDFMNDMFFGTISSDNNKSYNLTGNSNNKNGRWEEEEQGGFDDSMRSDSSKLTQEWLHEARRM VASSPSRGGFDSPAAAAPVKLVGAPRFANARLSTGSALDRRDPLSRSARRNRATEGFSEEILTRSARHTRNGSISSEQSAETSPASQVHKWISKNIKPPN GSSPEYQFSNNNNAALVYPSNESSGLPPPPRQSTHHRRSRFQAESPTSHPPRSSSSPAQDIPRRFKHQHGHAAGPPPPPRSGQVLSPPKNLVESAHRRSI SKSTCSIEKIAPNQVAHGDEALGGQEVSLNGFLKKQRVKAEQIMNKEIDGKAKIILSGPSNSTSSMVAAICYAWLLENRVLKNNKEDADTPYVVVPVMNV RRGRMWKQRQAAWLFHHVGLDCKSLLFAEEVDFENLMMSGQLNILVVGQDILRTNGEVGSQCTILTDNYCEDAYDLLEFQMLKKLLLAGILLDTQNLNSA VELSTTRDSEAVQLLLAGSPPNYRTTIYDQLVQDQKDHAFFEALRRYYGKPPSSESGRTEKNSSNSSQTESNTTTKGDPSRTAKQNSSGGSRKAAAPTAA GAIVKVQAQQPNNSDSSRGKNKNFLSKWFGFGGK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019466 [exp]	0	1
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10024706 [exp]	8.9	0.7592
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10013327 [exp]	13.0	0.7826
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10021213 [exp]	14.3	0.7630
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030663 [exp]	19.9	0.7773
					Lus10038003 [exp]	21.2	0.7115
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10018143 [exp]	22.6	0.7515
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Lus10021206 [exp]	22.9	0.7706
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	24.5	0.7390
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	25.7	0.7390
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	26.8	0.7390

Compare expression of checked genes

Lus10019466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.