Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04220 219 / 8e-70 Plant protein of unknown function (DUF868) (.1) AT4G12690 216 / 7e-69 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) AT5G28150 196 / 3e-61 Plant protein of unknown function (DUF868) (.1) AT5G48270 192 / 5e-59 Plant protein of unknown function (DUF868) (.1) AT3G04860 187 / 1e-57 Plant protein of unknown function (DUF868) (.1) AT3G13229 158 / 3e-46 Plant protein of unknown function (DUF868) (.1) AT2G27770 121 / 5e-32 Plant protein of unknown function (DUF868) (.1) AT5G11000 117 / 7e-30 Plant protein of unknown function (DUF868) (.1) AT2G25200 77 / 9e-16 Plant protein of unknown function (DUF868) (.1) AT2G36470 76 / 1e-15 Plant protein of unknown function (DUF868) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043317 [exp] 506 / 0 AT2G04220 216 / 1e-68 Plant protein of unknown function (DUF868) (.1) Lus10006223 [exp] 254 / 5e-84 AT4G12690 213 / 2e-68 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Lus10036872 [exp] 227 / 2e-73 AT4G12690 202 / 2e-64 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Lus10001787 [exp] 191 / 3e-59 AT5G28150 357 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10039183 [exp] 191 / 2e-58 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10013755 [exp] 186 / 1e-56 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10020240 [exp] 183 / 5e-56 AT5G28150 356 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10042600 [exp] 164 / 4e-48 AT5G28150 310 / 3e-105 Plant protein of unknown function (DUF868) (.1) Lus10032896 [exp] 158 / 4e-46 AT2G04220 264 / 1e-87 Plant protein of unknown function (DUF868) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G084500 [exp] 317 / 1e-107 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.012G089100 [exp] 308 / 2e-104 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.010G047700 [exp] 284 / 5e-95 AT5G48270 223 / 3e-71 Plant protein of unknown function (DUF868) (.1) Potri.005G050900 [exp] 202 / 2e-63 AT5G28150 417 / 2e-148 Plant protein of unknown function (DUF868) (.1) Potri.005G068100 [exp] 200 / 3e-62 AT2G04220 385 / 4e-135 Plant protein of unknown function (DUF868) (.1) Potri.013G038000 [exp] 198 / 8e-62 AT5G28150 409 / 6e-145 Plant protein of unknown function (DUF868) (.1) Potri.007G101000 [exp] 194 / 6e-60 AT2G04220 369 / 7e-129 Plant protein of unknown function (DUF868) (.1) Potri.005G210800 [exp] 182 / 1e-55 AT5G28150 359 / 2e-125 Plant protein of unknown function (DUF868) (.1) Potri.002G051600 [exp] 180 / 1e-54 AT5G28150 364 / 2e-127 Plant protein of unknown function (DUF868) (.1) Potri.001G467500 [exp] 171 / 2e-51 AT2G04220 270 / 5e-90 Plant protein of unknown function (DUF868) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05910 [flax] [poplar] DUF868 Plant protein of unknown function (DUF868)
Representative CDS sequence Show only first row Show all	>Lus10019467 pacid=23181538 polypeptide=Lus10019467 locus=Lus10019467.g ID=Lus10019467.BGIv1.0 annot-version=v1.0 ATGCAACACCTTGACAAGCCCCTCCCGGCGGCTTCCTCCGCCGCCGTCACCAGGTCCGGCCAGAGCATATTCTCGTCGGTCTACCGAACAAAAATATCCG GCCATTGCCGCCTAGTAACCGTGACATGGTCCAAAAACCTCCTCCTCCATGGCCTCTCCATCTCCCTCCAAGACCACCGGGCCCCACAGCACCAAGTCAC CCTGGAGCTCAAACCCTGGTACTTCTGGCGCAAGCATGGCTCCAAGCGCTTCTTCCTCGACAACAACACTCACAACAACAAGGCGCCGTTACCGTTAGAC GTCTTCTGGGACCTTAAATCCGCCAAGTTCCACGTCGACACGCCCGAGCCCTCGTCACATTACTACGTCGCGCTAGCGTGCGACAACGAGGTGGTCCTCC TCCTCGGAGACATGCGCAACGAAGCCTTCCGCAAGTCCCGCTGCCGTCCTTCCTTAATCGACCCGGTTCTCCTCTATAGGAAGGAACACGTGTACGCGGG GAAGAAGGTGCTCCTCACGCGCGCCAAGTTCCACGACCGCGGCAAGGTCCACGACATCTCTATAGAGTGTAGGAACAAGGCCGAGCCGGAGATGGAGATT CGGATGGACGGGAATCTGGCGGTGGAGGTGAAGCATTTGAGGTGGAAGTTTAGGGGGAACGACTCTGTTCAGCTTACTAAATATCTCAAGGTGGAAGTTT ACTGGGACGTTCATGATTGGTTGTTTAGTCCTGGATTGCGGCATGCCTCGTTTATATTTAAGCCGACGGAGACCATGAATATTTCGTCGTCCACGTCGTG GGATTCATTGCCGACGACGACGGCCACACCTTTGTCGTCCGGGGTTAGTAGTTCAGGGTCGTCAGCGGCGGCGGATGGGACGATCAGTGGGAGTGTTATT GGGGAGACGGAGTTTAGCCTTTTTCTGTATGCTTGGAGGATGGATTAA
AA sequence Show only first row Show all	>Lus10019467 pacid=23181538 polypeptide=Lus10019467 locus=Lus10019467.g ID=Lus10019467.BGIv1.0 annot-version=v1.0 MQHLDKPLPAASSAAVTRSGQSIFSSVYRTKISGHCRLVTVTWSKNLLLHGLSISLQDHRAPQHQVTLELKPWYFWRKHGSKRFFLDNNTHNNKAPLPLD VFWDLKSAKFHVDTPEPSSHYYVALACDNEVVLLLGDMRNEAFRKSRCRPSLIDPVLLYRKEHVYAGKKVLLTRAKFHDRGKVHDISIECRNKAEPEMEI RMDGNLAVEVKHLRWKFRGNDSVQLTKYLKVEVYWDVHDWLFSPGLRHASFIFKPTETMNISSSTSWDSLPTTTATPLSSGVSSSGSSAAADGTISGSVI GETEFSLFLYAWRMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04220			Plant protein of unknown funct...		Lus10019467 [exp]	0	1
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10032355 [exp]	1.4	0.9938
					Lus10042799 [exp]	1.4	0.9885
AT4G35150			O-methyltransferase family pro...		Lus10033655 [exp]	7.5	0.9822
AT5G14020			Endosomal targeting BRO1-like ...		Lus10031997 [exp]	10.1	0.9807
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10013693 [exp]	17.8	0.9691
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012185 [exp]	19.2	0.9878
AT2G04220			Plant protein of unknown funct...		Lus10043317 [exp]	23.3	0.9872
AT4G34215			Domain of unknown function (DU...		Lus10001128 [exp]	24.8	0.9700
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Lus10039902 [exp]	26.1	0.9633
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10036850 [exp]	26.9	0.9836

Compare expression of checked genes

Lus10019467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.