Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19540 116 / 4e-32 INDH, INDL IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) AT3G24430 64 / 3e-12 HCF101 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) AT2G45490 58 / 2e-10 ATAUR3 ataurora3 (.1) AT5G50960 53 / 1e-08 ATNBP35, NBP35 nucleotide binding protein 35 (.1) AT2G25880 49 / 3e-07 ATAUR2 ataurora2 (.1.2) AT4G32830 49 / 4e-07 ATAUR1 ataurora1 (.1) AT5G67380 45 / 8e-06 ATCKA1, CKA1 casein kinase alpha 1 (.1.2) AT3G50000 45 / 9e-06 ATCKA2, CKA2 "casein kinase II, alpha chain 2", casein kinase II, alpha chain 2 (.1) AT2G26980 44 / 1e-05 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT1G53050 43 / 3e-05 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011951 [exp] 199 / 3e-66 AT4G19540 111 / 3e-30 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10018779 [exp] 162 / 9e-49 AT4G19540 401 / 9e-140 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10024867 [exp] 162 / 2e-48 AT4G19540 402 / 1e-139 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10025895 [exp] 120 / 8e-35 AT4G19540 107 / 9e-28 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10020580 [exp] 64 / 2e-12 AT2G45490 482 / 3e-174 ataurora3 (.1) Lus10006266 [exp] 64 / 2e-12 AT2G45490 427 / 1e-152 ataurora3 (.1) Lus10043252 [exp] 64 / 3e-12 AT3G24430 817 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10019395 [exp] 64 / 3e-12 AT3G24430 745 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10034380 [exp] 58 / 5e-11 AT2G45490 60 / 5e-11 ataurora3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G042600 [exp] 144 / 5e-43 AT4G19540 422 / 5e-150 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.005G220500 [exp] 142 / 4e-42 AT4G19540 414 / 1e-146 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.018G076600 [exp] 64 / 2e-12 AT3G24430 835 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Potri.006G080500 [exp] 59 / 6e-11 AT2G45490 470 / 2e-169 ataurora3 (.1) Potri.001G336900 [exp] 54 / 4e-09 AT5G50960 571 / 0.0 nucleotide binding protein 35 (.1) Potri.006G235000 [exp] 49 / 4e-07 AT4G32830 553 / 0.0 ataurora1 (.1) Potri.007G054100 [exp] 47 / 2e-06 AT2G23070 638 / 0.0 Protein kinase superfamily protein (.1) Potri.005G145900 [exp] 47 / 2e-06 AT5G67380 620 / 0.0 casein kinase alpha 1 (.1.2) Potri.007G052800 [exp] 47 / 2e-06 AT5G67380 632 / 0.0 casein kinase alpha 1 (.1.2) Potri.018G057700 [exp] 46 / 2e-06 AT4G32830 544 / 0.0 ataurora1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0023 [flax] [poplar] P-loop_NTPase PF01656 [flax] [poplar] CbiA CobQ/CobB/MinD/ParA nucleotide binding domain
Representative CDS sequence Show only first row Show all	>Lus10019468 pacid=23181555 polypeptide=Lus10019468 locus=Lus10019468.g ID=Lus10019468.BGIv1.0 annot-version=v1.0 ATGAAAAACTTCCTGCAAAATTTTAGGGTTCGGTCGTTTATTTCTCTACAGAGGCTCGGCGGCGTTCGGCAGTATGCTGGGCCGTTTTCCAGATCAAAGC TACGGCTCGACGGAGTTAAGGACGTCATCGCCGTTGCTTCTGGCAAAGGAGGCGTTGGAAAATCCACCACTGCTGTAAACTTGGCTGTTGCCCTTGCGAA CAAGTGCAATTTGAAGGTGGGCTTGCTCGATGCTGATGTCTATGGACCGTCTGTCCCTATTATGATGAAGATCGACCAGAAGCCGAGTATCACCGAAGTG GAGATTGTCAGGGTTTCTTATGGTTGTTTCTCTGTCATTCAGTATATTGAGAGTCTTGCACATGCATTAGCTTATTGCCATGGAAAGGATGTGATCCATA GAGACATTAAGTCGGATAATCTATTGCTGGATCATGAGATCCAGCCACTGGTTGAAATCCCTCTGCGTCATTGA
AA sequence Show only first row Show all	>Lus10019468 pacid=23181555 polypeptide=Lus10019468 locus=Lus10019468.g ID=Lus10019468.BGIv1.0 annot-version=v1.0 MKNFLQNFRVRSFISLQRLGGVRQYAGPFSRSKLRLDGVKDVIAVASGKGGVGKSTTAVNLAVALANKCNLKVGLLDADVYGPSVPIMMKIDQKPSITEV EIVRVSYGCFSVIQYIESLAHALAYCHGKDVIHRDIKSDNLLLDHEIQPLVEIPLRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10019468 [exp]	0	1
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10000373 [exp]	4.0	0.8608
AT4G37020			unknown protein		Lus10000435 [exp]	6.5	0.8400
AT4G14385			unknown protein		Lus10011821 [exp]	6.7	0.8309
					Lus10024463 [exp]	11.0	0.7799
AT2G46090			Diacylglycerol kinase family p...		Lus10036388 [exp]	12.0	0.8194
AT3G56160			Sodium Bile acid symporter fam...		Lus10043443 [exp]	15.9	0.8083
AT1G69630			F-box/RNI-like superfamily pro...		Lus10006319 [exp]	21.8	0.7794
AT4G31150			endonuclease V family protein ...		Lus10024534 [exp]	22.3	0.8034
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10019399 [exp]	25.1	0.7865
AT2G37025		TRFL8	TRF-like 8 (.1.2)		Lus10026522 [exp]	25.6	0.7795

Compare expression of checked genes

Lus10019468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.