Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52450 360 / 5e-120 MATE efflux family protein (.1) AT2G34360 330 / 2e-108 MATE efflux family protein (.1) AT1G73700 327 / 6e-107 MATE efflux family protein (.1) AT1G71140 318 / 1e-103 MATE efflux family protein (.1) AT1G15150 306 / 7e-99 MATE efflux family protein (.1) AT1G15160 303 / 7e-98 MATE efflux family protein (.1) AT1G15170 293 / 8e-94 MATE efflux family protein (.1) AT2G04080 282 / 1e-89 MATE efflux family protein (.1) AT2G04040 279 / 2e-88 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT2G04090 272 / 8e-86 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017949 [exp] 546 / 0 AT5G52450 402 / 2e-136 MATE efflux family protein (.1) Lus10019492 [exp] 439 / 1e-150 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10041994 [exp] 364 / 2e-121 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10001318 [exp] 345 / 4e-114 AT5G52450 507 / 1e-177 MATE efflux family protein (.1) Lus10029668 [exp] 329 / 1e-108 AT5G52450 490 / 6e-172 MATE efflux family protein (.1) Lus10017998 [exp] 319 / 2e-103 AT5G52450 556 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 296 / 5e-95 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10029694 [exp] 293 / 1e-93 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 291 / 2e-93 AT1G15170 562 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G051900 [exp] 388 / 1e-130 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.006G170900 [exp] 380 / 6e-128 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.006G171240 [exp] 380 / 8e-128 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.010G116700 [exp] 369 / 3e-123 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.010G116900 [exp] 319 / 4e-104 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 319 / 5e-104 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.004G094700 [exp] 300 / 2e-96 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.008G126500 [exp] 292 / 2e-93 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.017G120500 [exp] 281 / 1e-89 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.010G117000 [exp] 281 / 6e-89 AT1G15170 545 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10019470 pacid=23181615 polypeptide=Lus10019470 locus=Lus10019470.g ID=Lus10019470.BGIv1.0 annot-version=v1.0 ATGAACGACGACCCTGAATCCGGAATCATTACCGACTGCGACGACAAACCAGAGTTCACTGTAGAGCTCCGCAAGTTGGTGAAATTGGCAGGCCCCCTGC TTCTCGTCAGCTTCCTGCAGTTCAGCCTCCAGATCATGTCGGTGATGTTCGTCGGCCGTCTGGGCCAGCTCCACTTAGCTTCAGCTTCTCTAACCACCTC CATTGCAGGACTCACCGGTTACAATGTCATGCGCACTCCTCACTGCCTTCTCGTAGCACCTCCGTTAAACAAGTATCCCGAAATTTACCTGCGTGACCAG ATAGGAATGGGGGCAGCCTTGGAGACGCTGTGCGGAAGAGCTTACGGAGCAAAACAATACCACATGCTAGGAGTTCATATGCAGAGGGCAATGCTAGTCT TCACAATCCTCTGCATCCCAGTTTCCGTACTGTTATCTTTTACGCGTCCGGTTCTCAGATTCCTGAAGCAGGAAAGTTCCATCTCCAAATTAGCAGGGGA ATCAGCTCCTTGGCTGATTCCAAGCCTTTTGCCATTCGGCATTCTTCAGTGCCAGACCAGATTCCTGCAGACTCAAAACATCACATCACCACAGATGATA AGCGCCGCTGTCGGGTTCGTAGTCCACGGCGTATCCTGCTGGGTCCTGATTTTCGGTATTCACATGGGGAACAGCGGTGCCTGCCTGGCCAACGGCGTTA CTTATTGGACGATCGCCGTAATCCTGATGGCGTACATCAAGTTCTCAGGTTCCTGTCAGGATACCTGGAAAGGTTTCAACTTGGATTGCGCTAGAGATGT GCTCTCTTTCCTCAAGTTAGGTGTCCCTTCTGGCCTCATGACTTGCTTGGAGTTCTGGTCGTACCAGGTGTTCATCGTTCTGGCGGGGCTTCTTCCGAAT CCGCAGCTCGAGACTTCAATGATCTTAATCAGCCTCAACACGTCAGCCTTGGTGTTTCGGATCCCCATGAGTCTCGGCAGTGCAATAAGGTATAAGAAAT GCACGAGAGTTTCCAAGGAGCTAGGGGCCGGCAAACCAAAGGTAGCGAGGATGGCGGTGCGGACAGTGCTGTTCCTAGCCGTGTTTCAAGGGCTGCTGGC AACCTCAATCGCCACTGCAGCTCGACACGTGTTGGGTTTAATGTACACCGATGATCATCAACTGGTCAGATATCTAGCCAAAGTAGTCCCCGTACTTGCT GTATCTAACTTCGTGGATGGTATCCACGGAGTTCTATCAGGTAATGGCCGAAAGACGAGAGTTGCATACATAAGCCTGGGAGCTTATTACCTTGTCGGTA TTCCAGTTGCTGCCTTGTTTACATTCGTAGGCCATTTTGGAGGGAAGGGGTTTTTGTTTGGAATTATTGCTGGGAGTGGAGTGAAGGCTACTGTACTCTT GGTAATGACATTATCAACTAATTGGGAGTATGAGGTAACTTACTGGTTCAAGATCAGAAACTTATAA
AA sequence Show only first row Show all	>Lus10019470 pacid=23181615 polypeptide=Lus10019470 locus=Lus10019470.g ID=Lus10019470.BGIv1.0 annot-version=v1.0 MNDDPESGIITDCDDKPEFTVELRKLVKLAGPLLLVSFLQFSLQIMSVMFVGRLGQLHLASASLTTSIAGLTGYNVMRTPHCLLVAPPLNKYPEIYLRDQ IGMGAALETLCGRAYGAKQYHMLGVHMQRAMLVFTILCIPVSVLLSFTRPVLRFLKQESSISKLAGESAPWLIPSLLPFGILQCQTRFLQTQNITSPQMI SAAVGFVVHGVSCWVLIFGIHMGNSGACLANGVTYWTIAVILMAYIKFSGSCQDTWKGFNLDCARDVLSFLKLGVPSGLMTCLEFWSYQVFIVLAGLLPN PQLETSMILISLNTSALVFRIPMSLGSAIRYKKCTRVSKELGAGKPKVARMAVRTVLFLAVFQGLLATSIATAARHVLGLMYTDDHQLVRYLAKVVPVLA VSNFVDGIHGVLSGNGRKTRVAYISLGAYYLVGIPVAALFTFVGHFGGKGFLFGIIAGSGVKATVLLVMTLSTNWEYEVTYWFKIRNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52450			MATE efflux family protein (.1...		Lus10019470 [exp]	0	1
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	6.0	1.0000
					Lus10011061 [exp]	7.6	1.0000
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10012855 [exp]	9.9	1.0000
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10011845 [exp]	10.2	1.0000
					Lus10011759 [exp]	10.4	1.0000
					Lus10014487 [exp]	10.8	1.0000
					Lus10022145 [exp]	11.4	1.0000
AT1G67623			F-box family protein (.1)		Lus10022147 [exp]	13.0	1.0000
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Lus10020662 [exp]	15.9	1.0000
AT1G08790			Protein of unknown function (D...		Lus10021997 [exp]	16.2	1.0000

Compare expression of checked genes

Lus10019470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.