Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24690 175 / 1e-47 AtNBR1 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043320 [exp] 686 / 0 AT4G24690 290 / 1e-86 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) Lus10017950 [exp] 163 / 2e-43 AT4G24690 536 / 0.0 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G085450 [exp] 170 / 3e-48 AT4G24690 279 / 2e-87 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) Potri.012G085700 [exp] 167 / 1e-44 AT4G24690 497 / 2e-166 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) Potri.015G084000 [exp] 166 / 2e-44 AT4G24690 490 / 5e-164 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019471 pacid=23181531 polypeptide=Lus10019471 locus=Lus10019471.g ID=Lus10019471.BGIv1.0 annot-version=v1.0 ATGGACCAGAAGCCTCTGGTTGCCACTAATGTGATCACCCAAGCAAGGGTTGGCAGTGTCCCAACTGCACCATGTTGGGTTCCATGCGTGCCAGAAGATG GTGCTGTTAAATGCAATGGACCTTCTGATACTATCCAGGATGACCGTGTGCCAAGTCTACCGAATCCTATTTCTCATCCTATTGATTTGACTAAGGTTTA TGAGAATGATTCTTCTCCATTAAGGGGAATGTTTGGGGATTCTTTATGGCCCCTAGTTAAGAAGAAGGCAATTGGTGAAGCGGATAAGCAATCAAAGGAA CAAAGTGCTGCAATTCCTGTTTTGACTGATACAATGCAGCGTTGGGGCACTACTTGTCTGAGGACTAATATGTTGCCTAATGCTAGCAGCCCTCACGTTC CGGTGCCTCTGGATCTTACTGATGCTAAGAGTTCTAACTCACAGAATGATGGATTGATTGGCTTGTTTCACCAAAATATTATATGTGATGGAGAGGAAGA TCATGACTTGTGCAGCTTATGCTTTGCTGACATTGTTAATAAAGCTGACTACATCAAGATGAACGCACCCATGTCTGCTCAACATTCACAGCCTTCCAGG AGCTTGCATGATCCTTTTTACCTGTCTTATCATACGTATGTTCTTCTAATTTGCGAGGTTCAAAGTATTGGACTGTTTTCACCTGGGAGGTCATCTCTTC TTAAGTTTGATAGCTGTTTTGTTTTAGATGTGAATGTAGAGGATGGTACCATAATGGCACCATCCACTACATTTACCAAGATATGGCGGATGCGAAACAC TGGTGTTGTTGCATGGCATTGTGGAACTCGCCTAGTGCAAATTGGAGGTGACAAATTTAGCACTAAAGATACAGCTTATCTGGAGATTCCTGCGCATGGT GTTCCTGTGGATGCAGAACTTGACGTTTCCATGGACTTCACTTCACTTCACCTGCATCTCCTGGCCAGTATATTTATTCCTGGAGAATGGCTTCACCACA TGGCACACCATTTGGTCAAGGCATTTGGGTTCACATCCAGTAGATGTGAAGAACAAACCTCTTGCTGGCGAGGTTTTCCCGGAGACTATGGTTCTGCGAC ATCTTCAGAGCATGTTAACTTGTCGCATCTTGCTTCTCCTTCCGGTGGCTGCAAAAGTAGTGATCTCCCAACAGTAAAACCAATTAAACCAAAAGGCATG ATGAAGGGCAAGGGAGTAAATGATTCTGCTATCGAGAAGATGCTTCTGGAGGATCTGGAAGAGATGGGATTCACGCAGACAAATCTGAACAAGGAAATCC TGAGGATGAATCAGTACGACTTGGAGCAGTCATTGAACGATCTCTGTGGGGTTGCCGAGTTTGATGATTCTATCCTCCTAGAGTTGGATGAGATGGCAAG TAGCGTGCTTGACTGA
AA sequence Show only first row Show all	>Lus10019471 pacid=23181531 polypeptide=Lus10019471 locus=Lus10019471.g ID=Lus10019471.BGIv1.0 annot-version=v1.0 MDQKPLVATNVITQARVGSVPTAPCWVPCVPEDGAVKCNGPSDTIQDDRVPSLPNPISHPIDLTKVYENDSSPLRGMFGDSLWPLVKKKAIGEADKQSKE QSAAIPVLTDTMQRWGTTCLRTNMLPNASSPHVPVPLDLTDAKSSNSQNDGLIGLFHQNIICDGEEDHDLCSLCFADIVNKADYIKMNAPMSAQHSQPSR SLHDPFYLSYHTYVLLICEVQSIGLFSPGRSSLLKFDSCFVLDVNVEDGTIMAPSTTFTKIWRMRNTGVVAWHCGTRLVQIGGDKFSTKDTAYLEIPAHG VPVDAELDVSMDFTSLHLHLLASIFIPGEWLHHMAHHLVKAFGFTSSRCEEQTSCWRGFPGDYGSATSSEHVNLSHLASPSGGCKSSDLPTVKPIKPKGM MKGKGVNDSAIEKMLLEDLEEMGFTQTNLNKEILRMNQYDLEQSLNDLCGVAEFDDSILLELDEMASSVLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10019471 [exp]	0	1
AT1G48360			zinc ion binding;nucleic acid ...		Lus10037442 [exp]	1.7	0.7820
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10038317 [exp]	3.3	0.7010
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10035484 [exp]	3.5	0.7358
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10039935 [exp]	10.2	0.7524
AT3G62930			Thioredoxin superfamily protei...		Lus10029440 [exp]	11.2	0.7029
AT3G22530			unknown protein		Lus10000009 [exp]	15.0	0.7044
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10011716 [exp]	15.2	0.7464
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	21.4	0.7352
AT2G30690			Protein of unknown function, D...		Lus10014743 [exp]	21.6	0.6964
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10010833 [exp]	22.4	0.6970

Compare expression of checked genes

Lus10019471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.