Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48250 620 / 0 BIR6 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02490 317 / 4e-99 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15980 303 / 5e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62720 128 / 2e-31 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G52640 124 / 9e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 122 / 3e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 123 / 4e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 122 / 4e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 122 / 1e-28 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT3G62540 121 / 1e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043322 [exp] 1062 / 0 AT3G48250 660 / 0.0 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032092 [exp] 285 / 6e-87 AT3G02490 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011566 [exp] 124 / 2e-29 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 122 / 2e-29 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025533 [exp] 122 / 2e-28 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021250 [exp] 122 / 2e-28 AT5G06400 988 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 121 / 2e-28 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 120 / 2e-28 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033522 [exp] 120 / 7e-28 AT1G79540 663 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G084800 [exp] 728 / 0 AT3G48250 715 / 0.0 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G108000 [exp] 338 / 2e-107 AT3G02490 623 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G108100 [exp] 336 / 2e-106 AT3G02490 604 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 137 / 2e-34 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050240 [exp] 132 / 2e-32 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 129 / 2e-31 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.002G176100 [exp] 127 / 1e-30 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 127 / 1e-30 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.014G056400 [exp] 127 / 2e-30 AT1G02060 885 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034300 [exp] 123 / 5e-30 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019474 pacid=23181597 polypeptide=Lus10019474 locus=Lus10019474.g ID=Lus10019474.BGIv1.0 annot-version=v1.0 ATGTTACGAGCAAAGTCAATTTTTTCTACAATCAAGCTTTCCCGGATCCTCCAATCAGCTCGTCATTCCCCTGCTGCTCAGCCCCTTCTTCCTCAGGTAA CCAGTTCCAACCAATTTGATTCCCAATGTTTCAACGCCCATCAAATTCTCCACCTCTCATCCAGATCATCAAACTCCATGCTTAACCTACTGTTAGAAAA TGATTGGTCCGCCGAGTTGCATAACCAGTTAGAAGAGAGCTTTCATTCACCGATTACCCACGAGACGGTTGTTTATGTACTGAGGAAGCTGGAACAAGTG CCAGACAACGCTTGGGGTTTTTACAACTGGGCCAGGAAGAGAGATGGCTATCTACCAAGTTCCTCCCTTTATAGCCTGTTGCTTAGGCTGTTTGCTAAGA AGGATTCTATGAAGAAGTTCTGGATCACTCTGAGGAAAATGAGAGAGGAAGGGTTTTGTTTGGACGATGAGACTTATCTAACACTTTCCAAGGTCTTTAA GAAGGAGAGAATGAACAATGACGCTGTAGCTTTCAAACAATTTTATGAGAAGATGATTCAGGAGAATGCCATTGATGGTGTGGTGAACACGGTGGTTGGT GTAATTCTGGAAGAAGAAGAACAATGCTTTGATAAGGTTGAGAGCCGGTTGATGGATATGAAGATTGTTTTGTCTGATAACTTTGTGATACGATCATTGA AGGTGCTAAAGAGTCAACCTTTAAAAGCTTTGAAGTTCTTCCATTGGGTTCCGAAGTCGTGCGAGGGATATAAGCACAACACTGTTACTTACAATGCTAT GGCTAGGGTTCTTGGTCGAGGGGATACCATAGGGAAATTCTGGAGCCTCGTTGAGGAAATGAAGAATGCTGGCTTCGAGATCGATATCGATACGTACATA AAGATCTCGAGGCACTTTCAGAAGTATAAGTTGACGGAGGAGGCGGTAAAGCTATATGAATTTATGATGGACGGTCCGTTTAAGCCCTCTGTCCAAGATT GCAGCTTGCTTCTAAGAAACATGTCTTCCAGTCATAAGCTGGATCTGAGTTTAGTTTTTAGAGTCGTGCAGAAGTACGAGAAGTCCGGGAATGTTCTGTC CAAAGCTGTTTATGACGGGATGCACAGGTCTTTTGTTAATGTGGGGAGCTTCGACGAAGCGGAAAAGATTGTGAAAGCTATGAAAGATGCAGGATACGAA CCGGATAATATCACGTATAGCCAGTTGGTTTTCGGATTATGTAAAGCCGGTAGACTAGATGAAGCCTGCAAGATTTTGGATGATATGGAAATAGAAGGAT GCACACCGGATATCAAGACTTGGACCATATTGATTCAGGGACACTGTGATGCCGGGGAACTGGGGAAGGCGTTTGTGTGCTTTGATACAATGATGAGGAA AAATGGCGGCCCTGATGCTGATTTGGTGGATGTGTTGATGAAGGGCTTTGTAGGCCAAAAGAGGGTAGATGGAGCGTACGTATTTCTAGTTGAGATGATC AATAAGGCTCATGTGACACCTTGGCAAGCTACATATAAGCTTCTTATCGACAGCCTTTTAGGCGCGAGCAAACTCGAAGAGTCGATGAATCTCCTCCGGT TGATGAAGAAGCATAACTATCCACCGCATGCTGAGCCTTTTGTTCAATACATCTCGAAATTTGGGACCGTGCAAGATGCTGCGGATCTCCTGCAGGCGTT GAGTAGCAAACAGTATCCTTCGTTGACGGCCTATCGGAATGTGTTTGAATCCTTCTTCAAGGAAGGTAGACATTCTGAGGCGCAGGATCTGCTTTATAAA TGCCCTTATCATGTTCGTGAGCATCAACAGATTGGTCAGCTGTTTGGCTCCGCAAAGAATGGTGCAGCTGCTGCAACCGTAGCTAAGAACACTGTCACAT AG
AA sequence Show only first row Show all	>Lus10019474 pacid=23181597 polypeptide=Lus10019474 locus=Lus10019474.g ID=Lus10019474.BGIv1.0 annot-version=v1.0 MLRAKSIFSTIKLSRILQSARHSPAAQPLLPQVTSSNQFDSQCFNAHQILHLSSRSSNSMLNLLLENDWSAELHNQLEESFHSPITHETVVYVLRKLEQV PDNAWGFYNWARKRDGYLPSSSLYSLLLRLFAKKDSMKKFWITLRKMREEGFCLDDETYLTLSKVFKKERMNNDAVAFKQFYEKMIQENAIDGVVNTVVG VILEEEEQCFDKVESRLMDMKIVLSDNFVIRSLKVLKSQPLKALKFFHWVPKSCEGYKHNTVTYNAMARVLGRGDTIGKFWSLVEEMKNAGFEIDIDTYI KISRHFQKYKLTEEAVKLYEFMMDGPFKPSVQDCSLLLRNMSSSHKLDLSLVFRVVQKYEKSGNVLSKAVYDGMHRSFVNVGSFDEAEKIVKAMKDAGYE PDNITYSQLVFGLCKAGRLDEACKILDDMEIEGCTPDIKTWTILIQGHCDAGELGKAFVCFDTMMRKNGGPDADLVDVLMKGFVGQKRVDGAYVFLVEMI NKAHVTPWQATYKLLIDSLLGASKLEESMNLLRLMKKHNYPPHAEPFVQYISKFGTVQDAADLLQALSSKQYPSLTAYRNVFESFFKEGRHSEAQDLLYK CPYHVREHQQIGQLFGSAKNGAAAATVAKNTVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Lus10019474 [exp]	0	1
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Lus10022870 [exp]	2.2	0.9195
AT2G37510			RNA-binding (RRM/RBD/RNP motif...		Lus10023758 [exp]	3.0	0.8691
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10028574 [exp]	5.3	0.9091
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Lus10015441 [exp]	5.5	0.8882
AT3G18580			Nucleic acid-binding, OB-fold-...		Lus10027237 [exp]	6.7	0.8912
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Lus10020149 [exp]	7.7	0.8914
AT3G18600			P-loop containing nucleoside t...		Lus10038950 [exp]	10.2	0.8695
AT3G03060			P-loop containing nucleoside t...		Lus10031211 [exp]	11.4	0.8916
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10015029 [exp]	12.0	0.8633
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022346 [exp]	12.5	0.8670

Compare expression of checked genes

Lus10019474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.