Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15354 779 / 0 SPA3 SPA1-related 3 (.1) AT1G53090 779 / 0 SPA4 SPA1-related 4 (.1.2) AT2G46340 460 / 2e-147 SPA1 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) AT4G11110 386 / 2e-119 SPA2 SPA1-related 2 (.1) AT2G32950 327 / 1e-100 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52250 169 / 6e-46 EFO1, RUP1 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G23730 156 / 1e-41 EFO2, RUP2 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 65 / 6e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT2G47990 65 / 2e-10 SWA1, EDA13, EDA19 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) AT2G32700 63 / 6e-10 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043323 [exp] 1173 / 0 AT3G15354 906 / 0.0 SPA1-related 3 (.1) Lus10019476 [exp] 984 / 0 AT3G15354 624 / 0.0 SPA1-related 3 (.1) Lus10035332 [exp] 339 / 3e-105 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029990 [exp] 338 / 1e-104 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033942 [exp] 221 / 2e-60 AT4G11110 766 / 0.0 SPA1-related 2 (.1) Lus10032358 [exp] 179 / 2e-46 AT4G11110 784 / 0.0 SPA1-related 2 (.1) Lus10027454 [exp] 145 / 1e-38 AT5G23730 248 / 2e-81 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005742 [exp] 124 / 3e-31 AT5G52250 226 / 3e-72 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029221 [exp] 65 / 1e-10 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G399600 [exp] 1041 / 0 AT3G15354 1003 / 0.0 SPA1-related 3 (.1) Potri.011G119500 [exp] 1000 / 0 AT3G15354 982 / 0.0 SPA1-related 3 (.1) Potri.014G095300 [exp] 457 / 5e-146 AT2G46340 846 / 0.0 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) Potri.001G094500 [exp] 455 / 4e-145 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.003G137100 [exp] 444 / 2e-140 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.014G159300 [exp] 347 / 2e-108 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G021700 [exp] 322 / 3e-101 AT2G32950 686 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G002700 [exp] 324 / 4e-100 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G140200 [exp] 173 / 4e-47 AT5G23730 427 / 3e-149 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G143200 [exp] 166 / 5e-45 AT5G23730 395 / 2e-137 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019475 pacid=23181549 polypeptide=Lus10019475 locus=Lus10019475.g ID=Lus10019475.BGIv1.0 annot-version=v1.0 ATGAGGTGGGTTGGTGATGTTAGCTTGAGACACTGGTTGGACAAACCGGATCGTTGTGTCGATGAATACGAATGCTTCCATGTATTTTCTCAAATTGTTG ATTTTGTCAACGTAGCACATTCTCAAGGGATTGTTGTCAACAATGTCAGGCCTTCTTGCTTTTACATGTCTTCTTTCAACCATGTTTCTTTCATCGAATC TGCTTCTTGTTCCGATTCCGGGTCTGATTCTTTGGAGGATGGGCTTAATAATCACGATGTCAGAAATTCTTCTTCTTCTTCTGCTTTACTTCTTGGCCCG TCTTCCCAGCAGAAAAGTAGCATTGGTGGTGGGAGTGAAGATTTTCGACCTGTATCGACCAATGCTTTGTCCGATATTAGTTGCATACAATCAAGCTCAG CCTGTGTAACTTGTGTGCCATTAGTAGAAGACAATGAAGAAGAAGATAAATTCTGTGATAGAGTTCCTGGGGAAGGAGGAGAAAGAAAGCAACCATTTCC AATGAAGGAGATTTTGCTTATGGAAACTGGTTGGTATACCAGTCCTGAAGAGGTTTCTAGTTCTACAAGTTCTTTCGCCTCTGATATATATCGGCTCGGC GTTCTTCTTTTTGAGTTGTTCTGCCCGGTCCATTCAAGGGAAGATAAGAGCAGAACCATGTCCAGTTTGCGTCATCGAGTTCTCCCACCCCAACTGCTGC TGAGCTGGCCAAAAGCAGCTTCATTTTGCTTATGGTTGTTGCATCCTGATCCAAGCAGTCGACCAAGTGTGAGTGATGTGTTGCAGAGCGAGTTCCTTGC TGAACGAAAAGATAAACTGGAACAGCGTGAAGCAGCAATACAGCTGAGAGAGAGCATAGAGGAGGAAGACCTGTTGCTCGAATTCCTGTTAGTGATACAA CAGAGAAAACAGGAAGCTGCTAATAAGTTGAGAGACACTGTTTCTCTTTTATGTTCCGACATTGAAGAGATTTTGAAGCATCAAAAGTTTGAAGGGAGTA TTGAAAGTACAGCCACAGATCAAATAGGGAAGGATGATCTTCTAGATTCAGAGATTCTACCCTTGAGCACATCCAATGCTGACGATGGTTTCAGCCTCGG TTCTAGAAAACGAGGCAGACCTGGCTGTCAGAATCGGGATAATGAGGAATGTGATGATAACTTAAACGAATCTCGAAACTCAAGTATGGGGCCATCACAA ACTCAAGAAAGCCAACTATTTAAGAACTCAAGGCTCATGAAGAACTTCAAGAAACTCGAAGCGGCATATCTTATGACCAGATGCAGGCCAGTTAGGCCAC TTGGCAGATCGGTTATTAGACATTCCCCAGCGAGCAGTGATGCAAGAGGTTCCGCTGTAGCAAGTGAAAGAAGTTCCATCAGTGCCTTGCAACCGAAAGA TCGGCATGTTATTGGGAGACAAAGTGGATGGATAAGTCCATTTCTTGAGGGTCTGTGCAAGTATTTATCAATGACTAATCTTAAAGTTAAGGCTGACTTG AAGCAGGGAGATTTGTTGAACTCCTCTAATCTAGTATGCTCTCTGAGTTTCGATCGAGATGGAGAATTCTTTGCCGCAGCTGGAGTAAATAAGAAAATCA AAGTGTTCGACTGCGATGCAATCATAAATGAGCACCAAGACATCCACTACCCTGTTGTTGAGATGGCTAGTAGGTCCAAACTCAGCAGTATATGTTGGAA CAGTTATCTTAAAAGCCAAATTGCTTCAAGTAACTTTGAAGGCGTGGTGCAGGTCTGGGATGCTTCAAGAGGTCAAGTACAAACTGAATTAAGAGAACAT GAGAGGCGTGTTTGGTCCATTGACTTCTCACCTGTAGATCCAACGCTTCTGGGGAGTGGGAGCGATGATGGTTCTGTTAAGCTATGGAGTATCAATCAGG CAATTCTAATTTTTGCACTTGTTGGATGTGAGCTTGAATCTAAACGTACTAACGGAGTAAGTATTGGTACCATAAAAACAAAGGCCAATGTTTGCTGCGT TCAGTTTCCCTTGGGTTCCAGTCGTTCTCTTGCATTTGGTTCCGCAGATCACAGGATTTATTACTATGATCTTCGCAACTCGAGAGCTCCTCTGTGCACA TTGGTTGGCCACAGTAAAACTGTGAGTTATGTGAAGTTTCTTGATGCAACAACCATTGTTTCCGCCTCAACGGATAACACACTGAAGCTATGGGATTTGT CAGCATGCACTGCTCGAGTCAATGACACTCCACTGCACTCTTTCACGGGACACACTAATGTAAAGAATTTTGTGGGTCTATCAGTGTCTGATGGTTACAT TGCTACTGGCTCAGAAACAAACGAGGTTGTGATCTACCATAGAGCGTTCCCGATGCCGGCACTGTCATACAAATTCAACAGTACAGACCCCATTTCGGGT GATGAAATGGAAGATGCGTCGCAGTTTATCTCATCGGTGTGTTGGCGAGGCCAATCCTCAACTCTTGTTGCTGCAAATTCAAGTGGAAATATCAAAATCC TGGAGATGGCTTGA
AA sequence Show only first row Show all	>Lus10019475 pacid=23181549 polypeptide=Lus10019475 locus=Lus10019475.g ID=Lus10019475.BGIv1.0 annot-version=v1.0 MRWVGDVSLRHWLDKPDRCVDEYECFHVFSQIVDFVNVAHSQGIVVNNVRPSCFYMSSFNHVSFIESASCSDSGSDSLEDGLNNHDVRNSSSSSALLLGP SSQQKSSIGGGSEDFRPVSTNALSDISCIQSSSACVTCVPLVEDNEEEDKFCDRVPGEGGERKQPFPMKEILLMETGWYTSPEEVSSSTSSFASDIYRLG VLLFELFCPVHSREDKSRTMSSLRHRVLPPQLLLSWPKAASFCLWLLHPDPSSRPSVSDVLQSEFLAERKDKLEQREAAIQLRESIEEEDLLLEFLLVIQ QRKQEAANKLRDTVSLLCSDIEEILKHQKFEGSIESTATDQIGKDDLLDSEILPLSTSNADDGFSLGSRKRGRPGCQNRDNEECDDNLNESRNSSMGPSQ TQESQLFKNSRLMKNFKKLEAAYLMTRCRPVRPLGRSVIRHSPASSDARGSAVASERSSISALQPKDRHVIGRQSGWISPFLEGLCKYLSMTNLKVKADL KQGDLLNSSNLVCSLSFDRDGEFFAAAGVNKKIKVFDCDAIINEHQDIHYPVVEMASRSKLSSICWNSYLKSQIASSNFEGVVQVWDASRGQVQTELREH ERRVWSIDFSPVDPTLLGSGSDDGSVKLWSINQAILIFALVGCELESKRTNGVSIGTIKTKANVCCVQFPLGSSRSLAFGSADHRIYYYDLRNSRAPLCT LVGHSKTVSYVKFLDATTIVSASTDNTLKLWDLSACTARVNDTPLHSFTGHTNVKNFVGLSVSDGYIATGSETNEVVIYHRAFPMPALSYKFNSTDPISG DEMEDASQFISSVCWRGQSSTLVAANSSGNIKILEMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019475 [exp]	0	1
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019476 [exp]	1.4	0.9696
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10043323 [exp]	2.0	0.9559
AT2G38330			MATE efflux family protein (.1...		Lus10012227 [exp]	3.5	0.9335
AT5G35170			adenylate kinase family protei...		Lus10036326 [exp]	4.0	0.9385
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015288 [exp]	4.6	0.9440
AT5G01030			Protein of unknown function (D...		Lus10017200 [exp]	5.3	0.9134
AT5G64380			Inositol monophosphatase famil...		Lus10020433 [exp]	6.5	0.9322
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Lus10040686 [exp]	6.7	0.9370
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10036471 [exp]	8.0	0.9111
AT5G08720			unknown protein		Lus10035962 [exp]	9.4	0.9289

Compare expression of checked genes

Lus10019475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.