Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15354 412 / 4e-134 SPA3 SPA1-related 3 (.1) AT1G53090 391 / 1e-126 SPA4 SPA1-related 4 (.1.2) AT2G46340 179 / 2e-47 SPA1 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) AT4G11110 115 / 1e-26 SPA2 SPA1-related 2 (.1) AT2G32950 99 / 2e-21 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019475 [exp] 982 / 0 AT3G15354 992 / 0.0 SPA1-related 3 (.1) Lus10043323 [exp] 657 / 0 AT3G15354 906 / 0.0 SPA1-related 3 (.1) Lus10032358 [exp] 159 / 1e-40 AT4G11110 784 / 0.0 SPA1-related 2 (.1) Lus10033942 [exp] 119 / 1e-27 AT4G11110 766 / 0.0 SPA1-related 2 (.1) Lus10035332 [exp] 112 / 2e-25 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029990 [exp] 110 / 5e-25 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G399600 [exp] 637 / 0 AT3G15354 1003 / 0.0 SPA1-related 3 (.1) Potri.011G119500 [exp] 602 / 0 AT3G15354 982 / 0.0 SPA1-related 3 (.1) Potri.014G095300 [exp] 176 / 2e-46 AT2G46340 846 / 0.0 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) Potri.003G137100 [exp] 172 / 5e-45 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.001G094500 [exp] 171 / 6e-45 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.014G159300 [exp] 115 / 1e-26 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G021700 [exp] 102 / 6e-23 AT2G32950 686 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G002700 [exp] 101 / 3e-22 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019476 pacid=23181483 polypeptide=Lus10019476 locus=Lus10019476.g ID=Lus10019476.BGIv1.0 annot-version=v1.0 ATGAGGTGGGTTGGTGATGTTAGCTTGAGACACTGGTTGGACAAACCGGATCGTTGTGTCGATGAATACGAATGCTTCCATGTATTTTCTCAAATTGTTG ATTTTGTCAACGTAGCACATTCTCAAGGGATTGTTGTCAACAATGTCAGGCCTTCTTGCTTTTACATGTCTTCTTTCAACCATGTTTCTTTCATCGAATC TGCTTCTTGTTCCGATTCCGGGTCTGATTCTTTGGAGGATGGGCTTAATAATCACGATGTCAGAAATTCTTCTTCTTCTTCTGCTTTACTTCTTGGCCCG TCTTCCCAGCAGAAAAGTAGCATTGGTGGTGGGAGTGAAGATTTTCGACCTGTATCGACCAATGCTTTGTCCGATATTAGTTGCATACAATCAAGCTCAG CCTGTGTAACTTGTGTGCCATTAGTAGAAGACAATGAAGAAGAAGATAAATTCTGTGATAGAGTTCCTGGGGAAGGAGGAGAAAGAAAGCAACCATTTCC AATGAAGGAGATTTTGCTTATGGAAACTGGTTGGTATACCAGTCCTGAAGAGGTTTCTAGTTCTACAAGTTCTTTCGCCTCTGATATATATCGGCTCGGC GTTCTTCTTTTTGAGTTGTTCTGCCCGGTCCATTCAAGGGAAGATAAGAGCAGAACCATGTCCAGTTTGCGTCATCGAGTTCTCCCACCCCAACTGCTGC TGAGCTGGCCAAAAGCAGCTTCATTTTGCTTATGGTTGTTGCATCCTGATCCAAGCAGTCGACCAAGTGTGAGTGATGTGTTGCAGAGCGAGTTCCTTGC TGAACGAAAAGATAAACTGGAAGAGCGTGAAGCAGCAATACAGCTGAGAGAGAGCATAGAAGAGGAAGACCTGTTGCTCGAATTCCTGTTAGTGATACAA CAGAGAAAACAGGAAGCTGCTAATAAGTTGAGAGACACTGTTTCTCTTTTATGTTCCGACATTGAAGAGATTTTGAAGCATCAAAAGTTTGAAGGGAGTA TTGAAAGTACAGCCACAGATCAAATAGGGAAGGATGATCTTCTAGATTCAGAGATTCTACCCTTGAGCACATCCAATGCTGACGATGGTTTCAGCCTCGG TTCTAGAAAACGAGGCAGACCTGGCTGTCAGAATCGGGATAATGAGGAATGTGATGATAACTTAAACGAATCTCGAAACTCAAGTATGGGGCCATCACAA ACTCAAGAAAGCCAACTATTTAAGAACTCAAGGCTCATGAAGAACTTCAAGAAACTCGAAGCGGCATATCTTATGACCAGATGCAGGCCAGTTAGGCCAC TTGGCAGATCGGTTATTAGACATTCCCCAGCGAGCAGTGATGCAAGAGGTTCCGCTGTAGCAAGTGAAAGAAGTTCCATCAGTGCCTTGCAACCGAAAGA TCGGCATGTTATTGGGAGACAAAGTGGATGGATAAGTCCATTTCTTGAGGGTCTGTGCAAGTATTTATCAATGACTAATCTTAAAGTTAAGGCTGACTTG AAGCAGGGAGATTTGTTGAACTCCTCTAATCTAGTATGCTCTCTGAGTTTCGATCGAGATGGAGAATTCTTTGCTGCAGCTGGAGTAAATAAGAAAATCA AAGTGTTCGACTGCGATGCAATCATAAATGAGCACCAAGACATCCACTACCCTGTTGTTGAGATGGCTAGTAGGTCCAAACTCAGCAGTATATGTTGGAA CAGTTATCTTAAAAGCCAAATTGCTTCAAGTAACTTTGAAGGCGTGGTGCAGGTTGGTCAATCCTTACATTCGCATTCCTTCAACTTTTCTACCGTTACT TAG
AA sequence Show only first row Show all	>Lus10019476 pacid=23181483 polypeptide=Lus10019476 locus=Lus10019476.g ID=Lus10019476.BGIv1.0 annot-version=v1.0 MRWVGDVSLRHWLDKPDRCVDEYECFHVFSQIVDFVNVAHSQGIVVNNVRPSCFYMSSFNHVSFIESASCSDSGSDSLEDGLNNHDVRNSSSSSALLLGP SSQQKSSIGGGSEDFRPVSTNALSDISCIQSSSACVTCVPLVEDNEEEDKFCDRVPGEGGERKQPFPMKEILLMETGWYTSPEEVSSSTSSFASDIYRLG VLLFELFCPVHSREDKSRTMSSLRHRVLPPQLLLSWPKAASFCLWLLHPDPSSRPSVSDVLQSEFLAERKDKLEEREAAIQLRESIEEEDLLLEFLLVIQ QRKQEAANKLRDTVSLLCSDIEEILKHQKFEGSIESTATDQIGKDDLLDSEILPLSTSNADDGFSLGSRKRGRPGCQNRDNEECDDNLNESRNSSMGPSQ TQESQLFKNSRLMKNFKKLEAAYLMTRCRPVRPLGRSVIRHSPASSDARGSAVASERSSISALQPKDRHVIGRQSGWISPFLEGLCKYLSMTNLKVKADL KQGDLLNSSNLVCSLSFDRDGEFFAAAGVNKKIKVFDCDAIINEHQDIHYPVVEMASRSKLSSICWNSYLKSQIASSNFEGVVQVGQSLHSHSFNFSTVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019476 [exp]	0	1
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10043323 [exp]	1.0	0.9729
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019475 [exp]	1.4	0.9696
AT2G38330			MATE efflux family protein (.1...		Lus10012227 [exp]	1.7	0.9534
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10029118 [exp]	2.0	0.9353
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10014382 [exp]	4.5	0.9197
AT5G35170			adenylate kinase family protei...		Lus10036326 [exp]	5.5	0.9343
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10029804 [exp]	7.3	0.9075
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Lus10040686 [exp]	8.8	0.9328
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10016195 [exp]	8.9	0.9066
AT1G71810			Protein kinase superfamily pro...		Lus10017924 [exp]	8.9	0.9123

Compare expression of checked genes

Lus10019476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.