Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15350 633 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G27480 622 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G53100 555 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G15050 471 / 2e-165 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 456 / 3e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G03340 440 / 6e-153 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G03520 439 / 1e-152 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G03690 388 / 2e-133 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G71070 369 / 7e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT2G37585 359 / 7e-122 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043324 [exp] 843 / 0 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10014495 [exp] 489 / 2e-172 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 485 / 1e-170 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10030084 [exp] 449 / 1e-156 AT5G15050 507 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 448 / 4e-156 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10033714 [exp] 435 / 6e-151 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10031626 [exp] 425 / 4e-147 AT4G03340 659 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10020316 [exp] 402 / 4e-138 AT3G03690 457 / 1e-160 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10025339 [exp] 394 / 3e-135 AT2G37585 483 / 6e-171 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G119600 [exp] 711 / 0 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G399500 [exp] 703 / 0 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.017G075600 [exp] 491 / 2e-173 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 479 / 2e-168 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 449 / 3e-156 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.009G003300 [exp] 446 / 2e-155 AT5G39990 447 / 1e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.019G104600 [exp] 435 / 4e-151 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G066200 [exp] 422 / 2e-146 AT3G03690 486 / 2e-172 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G263000 [exp] 396 / 2e-135 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 364 / 7e-124 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10019477 pacid=23181478 polypeptide=Lus10019477 locus=Lus10019477.g ID=Lus10019477.BGIv1.0 annot-version=v1.0 ATGGGGTCTCTGAACATGGAGAAGAAGTGGGTTTTCCCTCTGGTCATAAGCTCTCTCATCTGTGTCTTCCTGTTAGCAACTTCCTTCAACATGGGTCTCA TCTCTTCACTCCACACAATCAATCACATCTTCAACATTTTCCCGTCTCGTTTAAACCAAACAGGTCAAGGTTTTGCTGAATCGAAGGTCTCACAGTCTCC TCCTCCTCCACCGCCCGGTCCAAAAATTCCTAGGTTCGCTTACTTGATATCTGGATCGAAAGGTGACCTCGAAAAGCTTTGGCGAACGCTTCACGCCCTT TACCATCCAAGAAACCACTATGTTGTTCATCTGGATCTTGAGTCCCCAGCAAAGGAGAGGTTAGAGCTTGCTTCAAGGGTTGAGAAGCACCCAATTTTCT CCAAGTTTGGGAATGTTTACATGAATTCCAAAGCTAATATGGTGACCTATAGAGGACCCACGATGGTCTCCAATACACTTCATGCCTGTGCAATTCTTCT GAAGAAGAGTAAAGATTGGGATTGGTTTGTCAACCTCAGTGCTTCTGATTATCCTCTTGTAACCCAAGATGATCTTCTTGACACGTTCTCAACTTTGAAC CGAAATCTGAACTTTATTGAGCATACTAGTCAGTTAGGATGGAAAGAGGACAAGAGAGCAATGCCGCTGATTGTGGATCCTGGACTCTACTCTACCACTA AAGAAGACATTTTTCCAGCTAATCCCAAGAGAGCTCTCCCTACAGCATTCAAGCTGTTCACAGGTTCTGCATGGATGGTTCTTACCCGTCCATTTGTCGA GTACTTAATTTGGGGTTGGGATAACCTACCAAGAACGCTGCTCATGTATTACGCCAACTTCGTGTCCTCCCCTGAAGGTTATTTCCACACTGTAATATGT AATGCACCGGAATTTGCTCGTACAGCTATCAACCACGACTTGCATTACATTGCTTGGGATGTGCCTCCGAGGCAGCATCCGCATATTCTCACGCTTAACG ATACCGGAAAGATGATCGCAAGCGGTGCTGCCTTTGCCAGAAAGTTTCGTCAGGACGATCCTGCGCTAGAAAAGATCGATAATGAGTTGCTTGGGAGGAA GGTTGGGGCATTCACTCCTGGAGGGTGGTGCTCCAATAGCCCAAACTGTACCGAGGTTGGGGACATGAACAGCATCAAGCCGGGTCCAGGTGCCGACAGG CTTAAACATCTCATAGCTAGGGTTGCTTTGATGGCAAAGCGTCAAGAAAATCAGTGTAAATAG
AA sequence Show only first row Show all	>Lus10019477 pacid=23181478 polypeptide=Lus10019477 locus=Lus10019477.g ID=Lus10019477.BGIv1.0 annot-version=v1.0 MGSLNMEKKWVFPLVISSLICVFLLATSFNMGLISSLHTINHIFNIFPSRLNQTGQGFAESKVSQSPPPPPPGPKIPRFAYLISGSKGDLEKLWRTLHAL YHPRNHYVVHLDLESPAKERLELASRVEKHPIFSKFGNVYMNSKANMVTYRGPTMVSNTLHACAILLKKSKDWDWFVNLSASDYPLVTQDDLLDTFSTLN RNLNFIEHTSQLGWKEDKRAMPLIVDPGLYSTTKEDIFPANPKRALPTAFKLFTGSAWMVLTRPFVEYLIWGWDNLPRTLLMYYANFVSSPEGYFHTVIC NAPEFARTAINHDLHYIAWDVPPRQHPHILTLNDTGKMIASGAAFARKFRQDDPALEKIDNELLGRKVGAFTPGGWCSNSPNCTEVGDMNSIKPGPGADR LKHLIARVALMAKRQENQCK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10019477 [exp]	0	1
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10019365 [exp]	2.8	0.9260
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10007979 [exp]	3.7	0.9347
AT5G35160			Endomembrane protein 70 protei...		Lus10019073 [exp]	4.5	0.9268
AT2G25430			epsin N-terminal homology (ENT...		Lus10002920 [exp]	4.6	0.9267
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10043324 [exp]	6.5	0.9174
AT5G56350			Pyruvate kinase family protein...		Lus10010329 [exp]	7.5	0.8883
AT2G18030			Peptide methionine sulfoxide r...		Lus10041922 [exp]	7.7	0.8870
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032189 [exp]	8.1	0.9200
AT2G36330			Uncharacterised protein family...		Lus10032147 [exp]	9.8	0.8906
AT2G36330			Uncharacterised protein family...		Lus10032148 [exp]	10.2	0.8919

Compare expression of checked genes

Lus10019477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.