Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14870 183 / 1e-59 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1) AT5G35525 172 / 3e-55 PLAC8 family protein (.1) AT1G14880 161 / 4e-51 AtPCR1, PCR1 PLANT CADMIUM RESISTANCE 1 (.1) AT1G49030 148 / 7e-45 PLAC8 family protein (.1) AT1G68610 145 / 1e-44 PCR11 PLANT CADMIUM RESISTANCE 11 (.1) AT3G18460 141 / 1e-42 PLAC8 family protein (.1) AT3G18470 136 / 2e-41 PLAC8 family protein (.1) AT3G18450 123 / 1e-35 PLAC8 family protein (.1) AT1G58320 112 / 6e-32 PLAC8 family protein (.1) AT1G68630 110 / 1e-30 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043325 [exp] 370 / 6e-133 AT1G14870 187 / 4e-61 PLANT CADMIUM RESISTANCE 2 (.1) Lus10021696 [exp] 170 / 7e-54 AT1G14870 177 / 5e-57 PLANT CADMIUM RESISTANCE 2 (.1) Lus10034298 [exp] 158 / 2e-49 AT1G14870 160 / 7e-51 PLANT CADMIUM RESISTANCE 2 (.1) Lus10041474 [exp] 107 / 9e-30 AT1G14870 112 / 3e-32 PLANT CADMIUM RESISTANCE 2 (.1) Lus10004063 [exp] 100 / 5e-27 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10009036 [exp] 98 / 3e-26 AT1G68630 122 / 2e-36 PLAC8 family protein (.1) Lus10008890 [exp] 91 / 2e-23 AT1G68630 119 / 6e-35 PLAC8 family protein (.1) Lus10004064 [exp] 83 / 1e-18 AT4G30040 156 / 3e-41 Eukaryotic aspartyl protease family protein (.1) Lus10035039 [exp] 71 / 6e-16 AT5G35525 78 / 2e-19 PLAC8 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G132900 [exp] 253 / 9e-87 AT1G14870 189 / 7e-62 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108800 [exp] 249 / 3e-85 AT1G14870 179 / 8e-58 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G127700 [exp] 186 / 4e-60 AT1G68610 174 / 5e-56 PLANT CADMIUM RESISTANCE 11 (.1) Potri.008G132775 [exp] 174 / 2e-55 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132850 [exp] 173 / 5e-55 AT1G14870 184 / 6e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.007G042800 [exp] 155 / 2e-48 AT1G14870 152 / 7e-48 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108900 [exp] 155 / 4e-48 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G109100 [exp] 155 / 5e-48 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.012G092200 [exp] 142 / 3e-43 AT1G14870 164 / 2e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.012G060900 [exp] 144 / 9e-42 AT1G49030 199 / 2e-62 PLAC8 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10019478 pacid=23181560 polypeptide=Lus10019478 locus=Lus10019478.g ID=Lus10019478.BGIv1.0 annot-version=v1.0 ATGCACTCCTCCGCCCCAAATTCATACGAGAAGTTCAACGCGGAGGTAAGCCCTCCGCCGCCGCTTTACAAGGATTCCACAACCTTGGTTACGGAGACCA CCACCGGCAGCCAGTTCTACAGCAGCAATTCTTATGCTGAATCCGCGGATAAGGTTGACTGGTCTTCCGGACTCTGCGATTGTTTCTCCGATTTCCGCAA CTGCTGTTTAACTTTCTGGTGCCCATGCGTCACTTTCGGCCAGATCGCGGAGATTGTGGATATGGGATCATCTTCTTGTGGTGTGAATGGAGCACTCTAC ACACTAATTGCATGCGTGACTGGTTTCCCTTATTGCTACTCTTGTTTCTACCGCACCAAACTGAGGCAGCAGTACGGTCTCAAAGGCACCCACACTCAGG ATTGCTTAGTTCACTGCTTCTGCGAGTATTGTTCCTTGTGTCAGGAGTACCGGGAGCTTAAGAAAAACGGATTTGATTTGTCCATTGGATGGCATGGGAA TGTAGAGCGGAAGAATCGTAATCTGGAGATGGCTTCCTTGCCACCAGCAGTTGAAAGAGGCATGACCCGGTAG
AA sequence Show only first row Show all	>Lus10019478 pacid=23181560 polypeptide=Lus10019478 locus=Lus10019478.g ID=Lus10019478.BGIv1.0 annot-version=v1.0 MHSSAPNSYEKFNAEVSPPPPLYKDSTTLVTETTTGSQFYSSNSYAESADKVDWSSGLCDCFSDFRNCCLTFWCPCVTFGQIAEIVDMGSSSCGVNGALY TLIACVTGFPYCYSCFYRTKLRQQYGLKGTHTQDCLVHCFCEYCSLCQEYRELKKNGFDLSIGWHGNVERKNRNLEMASLPPAVERGMTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10019478 [exp]	0	1
AT4G31450			RING/U-box superfamily protein...		Lus10020145 [exp]	2.6	0.9442
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Lus10016625 [exp]	4.2	0.9417
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10029136 [exp]	4.9	0.9359
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10033491 [exp]	5.3	0.9259
AT1G80290			Nucleotide-diphospho-sugar tra...		Lus10020174 [exp]	5.6	0.9110
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10004517 [exp]	6.7	0.9384
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10012850 [exp]	10.1	0.9253
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10018142 [exp]	10.5	0.9269
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Lus10039200 [exp]	11.0	0.9048
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10016870 [exp]	11.3	0.9283

Compare expression of checked genes

Lus10019478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.