Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17180 231 / 7e-77 ATGSTU25 glutathione S-transferase TAU 25 (.1) AT1G78380 230 / 1e-76 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) AT1G17170 229 / 4e-76 ATGSTU24 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1) AT1G78340 226 / 4e-75 ATGSTU22 glutathione S-transferase TAU 22 (.1) AT1G78320 221 / 5e-73 ATGSTU23 glutathione S-transferase TAU 23 (.1) AT1G78370 221 / 6e-73 ATGSTU20 glutathione S-transferase TAU 20 (.1) AT1G17190 214 / 2e-70 ATGSTU26 glutathione S-transferase tau 26 (.1) AT1G53680 212 / 2e-69 ATGSTU28 glutathione S-transferase TAU 28 (.1) AT1G78360 209 / 4e-68 ATGSTU21 glutathione S-transferase TAU 21 (.1) AT3G43800 196 / 5e-63 ATGSTU27 glutathione S-transferase tau 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042468 [exp] 251 / 8e-85 AT1G78380 306 / 6e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10026199 [exp] 255 / 1e-81 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2) Lus10026198 [exp] 242 / 4e-81 AT1G78380 295 / 3e-102 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10042469 [exp] 240 / 1e-80 AT1G78380 284 / 5e-98 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10042470 [exp] 239 / 6e-80 AT1G78380 291 / 1e-100 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10005592 [exp] 212 / 1e-69 AT1G17180 271 / 9e-93 glutathione S-transferase TAU 25 (.1) Lus10030362 [exp] 211 / 4e-69 AT1G17170 210 / 7e-69 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1) Lus10030020 [exp] 190 / 9e-61 AT1G17180 238 / 1e-79 glutathione S-transferase TAU 25 (.1) Lus10035304 [exp] 172 / 1e-53 AT1G17180 238 / 6e-80 glutathione S-transferase TAU 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G114000 [exp] 284 / 8e-98 AT1G17180 265 / 2e-90 glutathione S-transferase TAU 25 (.1) Potri.011G113000 [exp] 278 / 2e-95 AT1G78380 259 / 3e-88 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G113125 [exp] 277 / 5e-95 AT1G78380 259 / 2e-88 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G112900 [exp] 256 / 9e-87 AT1G17180 271 / 1e-92 glutathione S-transferase TAU 25 (.1) Potri.001G436600 [exp] 254 / 6e-86 AT1G78380 318 / 2e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G113300 [exp] 254 / 1e-85 AT1G17180 274 / 9e-94 glutathione S-transferase TAU 25 (.1) Potri.001G437400 [exp] 252 / 2e-85 AT1G78380 316 / 2e-110 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G140800 [exp] 250 / 2e-84 AT1G78380 318 / 1e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437000 [exp] 249 / 3e-84 AT1G78380 308 / 1e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437200 [exp] 248 / 9e-84 AT1G78380 308 / 2e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019480 pacid=23181526 polypeptide=Lus10019480 locus=Lus10019480.g ID=Lus10019480.BGIv1.0 annot-version=v1.0 ATGAAAGCAGCAGTAGTGATGGAGGGAGATGATGCAGAGGTGGTTTTGCTGGATGCGGAAGGAAGCCCCTTTGCGACAAGGGTTAGAATCGCCTTGTTAG AGAAACAAATCGATCACCAGTCGAAGTATGAAGACTTGAGTAACAAGAGCAGTCTTCTTCTTCAGATGAACCCAGTTCATTCCAAAATTCCAGTCTTTAT CCACCGCGGGAAACCCATCTGCGAATCCCTCGTAATCCTTCAATACATCGATGAAGTCTGGGCCAACAAGTCTCCCGATCTACTGCCTTCCCTCCCCTTC CAACGCGCACACGCTAGGTTCTGGGCTGATTACATCGACACCAAGTTTTATACTACAGGACGGAAGCTGTGGACTTCCAGAGTTGAAGTGAAAGAAGAGC TGATAGACTGTTTCAGAGTGCTGGAACGAGAACTTGGGGATAAGCCGTTTCTGAGTGGCGAAAGCTTTGGGTTCATAGATATGGTGTTGATTTCGTTTTA CGGCTTCTTTTATACGTTTCAGGAGCTGGGTAAGTTCAATCTGGAAGCAGAGTGCCCCAAGATCGTGCTTTGGACTCAGAGATGCTTGCAGAAGGAGAGT GTCTCCAAGTCTGTAGCTGATCAGCACAAGGTCTTCCAAGGAGCGATGGAGATGAAAGGTAAGTTAAGGTTCTGA
AA sequence Show only first row Show all	>Lus10019480 pacid=23181526 polypeptide=Lus10019480 locus=Lus10019480.g ID=Lus10019480.BGIv1.0 annot-version=v1.0 MKAAVVMEGDDAEVVLLDAEGSPFATRVRIALLEKQIDHQSKYEDLSNKSSLLLQMNPVHSKIPVFIHRGKPICESLVILQYIDEVWANKSPDLLPSLPF QRAHARFWADYIDTKFYTTGRKLWTSRVEVKEELIDCFRVLERELGDKPFLSGESFGFIDMVLISFYGFFYTFQELGKFNLEAECPKIVLWTQRCLQKES VSKSVADQHKVFQGAMEMKGKLRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10019480 [exp]	0	1
AT4G16530			Family of unknown function (DU...		Lus10000730 [exp]	2.0	0.8691
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10023428 [exp]	2.0	0.8850
AT1G02070			unknown protein		Lus10009267 [exp]	2.2	0.8869
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10001821 [exp]	3.5	0.8741
AT4G09620			Mitochondrial transcription te...		Lus10028701 [exp]	3.7	0.8636
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Lus10015481 [exp]	5.0	0.8683
AT3G16175			Thioesterase superfamily prote...		Lus10006837 [exp]	5.5	0.8638
AT1G10940		ASK1, SNRK2-4, ...	SNF1-related protein kinase 2....		Lus10019225 [exp]	6.9	0.8275
AT1G76570			Chlorophyll A-B binding family...		Lus10015235 [exp]	7.5	0.8596
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010172 [exp]	8.7	0.8295

Compare expression of checked genes

Lus10019480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.