Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63260 329 / 3e-108 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G48440 323 / 2e-105 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G02830 198 / 5e-58 C3HZnF ZFN1 zinc finger protein 1 (.1) AT1G04990 184 / 1e-52 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G06410 171 / 2e-47 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G47850 171 / 4e-47 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT5G16540 167 / 6e-47 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT5G18550 167 / 5e-46 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G32930 154 / 3e-41 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT3G12680 136 / 2e-34 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043330 [exp] 866 / 0 AT5G63260 357 / 3e-119 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10026996 [exp] 198 / 7e-58 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10020196 [exp] 198 / 1e-57 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10035330 [exp] 180 / 2e-50 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10015156 [exp] 170 / 2e-47 AT1G04990 299 / 5e-98 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10033962 [exp] 166 / 2e-45 AT5G18550 456 / 7e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10029988 [exp] 162 / 1e-43 AT1G04990 323 / 2e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10013476 [exp] 153 / 5e-41 AT2G47850 532 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10007941 [exp] 152 / 2e-40 AT2G47850 524 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G089100 [exp] 382 / 6e-128 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.012G092500 [exp] 379 / 9e-127 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.014G159500 [exp] 210 / 4e-62 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G223700 [exp] 210 / 5e-62 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.019G053200 [exp] 202 / 3e-59 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.013G086800 [exp] 200 / 2e-58 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.010G022500 [exp] 175 / 8e-49 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G215700 [exp] 166 / 2e-45 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G080300 [exp] 149 / 4e-39 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.010G176300 [exp] 109 / 3e-25 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10019481 pacid=23181618 polypeptide=Lus10019481 locus=Lus10019481.g ID=Lus10019481.BGIv1.0 annot-version=v1.0 ATGGAGCAACCTCAATCAGCCAATTCCTTTCACGATCCTAATGGAACCAGCCACATAGAGATACAATCTCCTTCACCTTTGGACTCAGCTCAGGATCCAG ATCCTCAACCCTCCTTCCATCATGATGCTCCCCCGCCCGTTCACGCCGCCGGCAAAGATGAAGATGAGCTGCTCCGCCAGCAGGTTGAGAATCATTTGCA CCTGAAGGAGGACGCAGAGGAGGAGACGGAGAAGAAGGAGGTACAAATAGAAAGAGATTTGTGCCATTTGAATGGACAAACAACAGAGGTCGATGAGTCG GAGGAGCAGCAGCTCAACAATGGGGAGAGTGATGGATTTGGAGAGATGAATGTTGCGTATTTGGATGATCACCATCAGATGGAGAAAGAGGAGGAGGCAG TTGAAGAGGATAGCGGGGATATGAGAAGTAATGGCGGTTGGATGATTATGCAGCCTCAGTTTCCGGTGAGGCCTGAAGCTGAAGATTGCTCTTTCTATAT GAAGACTGGAAATTGCAGATTTGCGTCCAATTGCAAATTTAATCATCCGGTTAAAAGGAAAACCCAGGTGACAAGGGAAAGGTTCAAGGAAACTGAAGAA TCTGGGAAGATCGAATGCAAGATATTTTGCGACGATTTCTTCTCATGTATTGCAATTTACTCGAGCTCTGCGCAGTATTACTTGAGGACAGAGGGATGTA AGTACGGGAAAGCTTGTAGATTCAGCCACTCAAAAGTGAAAACTGTAGCAGTCCCTGCAAAATCTCCATTGGTGCCATTTCTCGAGTTCAACTTTCTTGG TCTACCAATTCGACTGGGAGAGAAAGAGTGTCCCTTTTATATGCGCAATGGCTCTTGTAAGTATGGTTCGAACTGCAGGTTTAACCATCCTGATCCTACA GTGGTTGGGGGAAATGAACCTTCTTCTGCAATTGGAAATGGCGGATCTCCTTCCCTGCATGCGTCATCACATTCAAAGATTCCATCTTGGTCTCCTCCTC CGCCACGACCAGCATTAAATGAGTCTCCTCCTTTTGTCCCAGTTATGTTCCCCCCCAATCAAGGAACCAATTTGGGGAATCTAGATTGGAATGGATATCA GGCTCCGCTATATCCACCACCGGAACGAGTAATGCCTCCTCCTCCTCCAGCATATATAATGACTAACCCTGTGTCTGAAACCAATTTTTACACCCGCCAT CAGCAACCAATGGTAGTAGATGAATACCCGGAGCGACCTGGTCAACCAGACTGCAGCTATTTCTTGAAAACTGGGGGATGCAAGTACAAGTCCAATTGCA AATTCAACCACCCAAAGGTTCGGATAGGGAAATCTCCTTCCTGTATTCTTAGTGACAAGGGACTGCCTTTGAGACCTGATCAAGACGTATGTGCATACTA CAGTCGGTACGGGATCTGCAAGTTCGGTCCTGCATGTAGATTCGACCATCCGATCCAAGCGGATTCACCAACGGGGTCACTTGATGGTCATCAATTTCAT GGATTCGAAAACTCTGCGTCTGATGAAGAAGACCATAGGCTGGGTGAGAAGGCAAAGGAGATTAAGATATCCAATTAG
AA sequence Show only first row Show all	>Lus10019481 pacid=23181618 polypeptide=Lus10019481 locus=Lus10019481.g ID=Lus10019481.BGIv1.0 annot-version=v1.0 MEQPQSANSFHDPNGTSHIEIQSPSPLDSAQDPDPQPSFHHDAPPPVHAAGKDEDELLRQQVENHLHLKEDAEEETEKKEVQIERDLCHLNGQTTEVDES EEQQLNNGESDGFGEMNVAYLDDHHQMEKEEEAVEEDSGDMRSNGGWMIMQPQFPVRPEAEDCSFYMKTGNCRFASNCKFNHPVKRKTQVTRERFKETEE SGKIECKIFCDDFFSCIAIYSSSAQYYLRTEGCKYGKACRFSHSKVKTVAVPAKSPLVPFLEFNFLGLPIRLGEKECPFYMRNGSCKYGSNCRFNHPDPT VVGGNEPSSAIGNGGSPSLHASSHSKIPSWSPPPPRPALNESPPFVPVMFPPNQGTNLGNLDWNGYQAPLYPPPERVMPPPPPAYIMTNPVSETNFYTRH QQPMVVDEYPERPGQPDCSYFLKTGGCKYKSNCKFNHPKVRIGKSPSCILSDKGLPLRPDQDVCAYYSRYGICKFGPACRFDHPIQADSPTGSLDGHQFH GFENSASDEEDHRLGEKAKEIKISN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10019481 [exp]	0	1
AT4G02010			Protein kinase superfamily pro...		Lus10037526 [exp]	1.0	0.9252
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10043330 [exp]	1.4	0.9113
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10015002 [exp]	3.2	0.8804
AT1G24265			Protein of unknown function (D...		Lus10003127 [exp]	3.7	0.8746
AT4G38870			F-box and associated interacti...		Lus10003705 [exp]	3.9	0.8898
AT5G51300			splicing factor-related (.1.2....		Lus10038932 [exp]	7.5	0.8742
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10008983 [exp]	9.2	0.8787
AT2G14520			CBS domain-containing protein ...		Lus10030665 [exp]	11.5	0.8514
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10033598 [exp]	11.6	0.8681
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10030005 [exp]	14.9	0.8550

Compare expression of checked genes

Lus10019481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.