Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48430 931 / 0 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) AT5G04240 267 / 1e-72 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) AT5G46910 244 / 2e-67 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT2G34880 188 / 8e-49 PKDM7C, MEE27 maternal effect embryo arrest 27, Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT1G30810 177 / 3e-45 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT4G20400 173 / 1e-43 PKDM7B, JMJ14 JUMONJI 14 (.1.2) AT1G08620 152 / 6e-37 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT1G63490 130 / 6e-30 transcription factor jumonji (jmjC) domain-containing protein (.1) AT2G38950 108 / 2e-23 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT4G06634 59 / 2e-08 C2H2ZnF zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043332 [exp] 2699 / 0 AT3G48430 877 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10009218 [exp] 270 / 7e-73 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10037989 [exp] 269 / 1e-72 AT5G04240 988 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10030988 [exp] 244 / 7e-67 AT5G46910 850 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10035385 [exp] 243 / 2e-66 AT5G46910 843 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10008063 [exp] 170 / 2e-42 AT1G30810 901 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10042566 [exp] 150 / 7e-36 AT3G04490 1382 / 0.0 unknown protein Lus10022024 [exp] 150 / 7e-36 AT3G04490 1370 / 0.0 unknown protein Lus10008495 [exp] 127 / 6e-29 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G089000 [exp] 1435 / 0 AT3G48430 807 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.012G092400 [exp] 850 / 0 AT3G48430 803 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.010G224700 [exp] 281 / 2e-76 AT5G04240 956 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Potri.008G037800 [exp] 279 / 6e-76 AT5G04240 997 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Potri.003G096100 [exp] 238 / 7e-65 AT5G46910 924 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.001G137700 [exp] 237 / 2e-64 AT5G46910 893 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.011G155100 [exp] 175 / 6e-44 AT4G20400 707 / 0.0 JUMONJI 14 (.1.2) Potri.013G046700 [exp] 171 / 1e-42 AT1G08620 1281 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.001G440900 [exp] 160 / 3e-39 AT4G20400 733 / 0.0 JUMONJI 14 (.1.2) Potri.019G018700 [exp] 153 / 3e-37 AT1G08620 1260 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02375 [flax] [poplar] JmjN jmjN domain CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase
Representative CDS sequence Show only first row Show all	>Lus10019482 pacid=23181502 polypeptide=Lus10019482 locus=Lus10019482.g ID=Lus10019482.BGIv1.0 annot-version=v1.0 ATGGCAGCCTCGGGTGGTTTAGCTGCAGAGAGGGAAGATGTGCTTCAATGGCTGAGAAACCTCCCGCTAGCACCAGAGTACCACCCAACTCTGGCCGAAT TCCAAGATCCAATTGCCTACATTTTCAAAATCGAGAAGGAGGCTTCCAAGTATGGTATCTGCAAAATCGTACCTCCTGTGCTACAATCCCCCAAGAAGAC TGCAATTGCCAACCTCAACCGTTCTCTCGCCGCTCGAGTTGTTGGGGGAGCTTCCTCTTCCTCCTCTTCCCCACCCACATTCACTACCAGGCAGCAGCAG ATCGGGTTCTGCCCGAGGAAACCAAGACCCGTTCAGAAGCCCGTGTGGCAGAGCGGGGAGAACTACACTTTCCAGGAGTTCGAGTCTAAGGCCAAGTCTT TCGAAAAATCCTATTTTAAGAAGTATGCGAAGAAAGGGACGACTCTGTCTCCTCTGGAGATCGAAACCCTCTACTGGAAAGCTACTGTCGACAAGCCTTT CTCCGTCGAGTACGCCAATGATATGCCTGGTTCTGCTTTCCCCGTCAAGAAGAATTCTGGGATTGTTGTCGAAGGGATGAGTGTTGGGGAAACTGAGTGG AATATGAGAGGTGTTGCTAGGGCTAAAGGTTCACTGCTTAGGCATATGAAGGAGGAGATTCCTGGTGTCACTTCCCCTATGTTGTATATAGCTATGATGT TTAGCTGGTTCGCTTGGCATGTCGAGGACCACGATTTGCACAGCTTGAACTACATGCACATGGGAGCTGGCAAGACTTGGTATGGTGTCCCCAAGGAGGC TGCTGTTGCTTTTGAGGAGGTCGTCAGGGTTCATGGCTATGGTGGAGAAATCAATCCTCTTCGTGAGTGCTCTTTTCAGCAGAATTCATGTCTTTCTGTT GACCATCTTGCAAGATTGATTACATTTGCCGTTCTGGGTGAGAAGACCACTGTTATGTCCCCGGAAGTATTCATTAGAGCAGGTGTTCCATGCTGCAGAC TGGTGCAAAATGCTGGGGAGTTTGTTGTGACCTTTCCAAGAGCCTATCATTCAGGATTCAGTCATGGTAAAGTGGCGGTGTACTTACAGTTTCCTCTATG GTTTAACTGCGGGGAGGCTTCTAATATTGCAACTCCAGAATGGCTGAGATTTGCTAAGGAGGCTGCTGTTAGAAGAGCTTCCATCAATTATCCTCCTATG GTGTCTCATTTTCAGTTACTATATGATCTTGCATCTGAGTTATGTTCAAGATTTACAACAAACGCCAGTGCTAAGCCAAGGAGTTCTAGACTAAAAGATA AGCAAAAGGGTGAATCGGAAATGGTGACCAAAGAGATTTTAGTGGAAAATGTCATGAATAATAACAATTTACTTCATAATCTTGGAAAAGGGGCCTCAGT TGTTCTTCTTCCCCGGAGTTCTTCAGATATATCTCTCTGCTCAAATTACCGTTTTGGATCACAGTTTGTAAAACCATCATTTGGGTTACGTGCTCACAAG GGTTTCATGGGACAATCTAAAGTCTCTGGTTATGATGACTCCAAACCAGACAAGATAGATGTGATAAATCAAGTTAAAGACATGTATCCTCTGAAAGCAA AGTTTGGCTCTTCATACGAAGGCCAGACATGTCCCGTGTTAGGCAAGAGTGGAAACTTGCATAACCCCCACCCAGAAACTGAAAAGATAGCGATGCTTGA CAATAAGTCCCCCGATCAGAGACTGTTTTCATGTGTCACCTGTGGAATTTTGAATTATGACTGTGTTGCTATTATTCAACCCAGAGAAGCCGCTGCAAGA TACTTAATGTCAGCCGATTGTAGCTTCTTTAATGACTGGACTGTTGTTTCTGGCGCTGGTAAAGAAGCACACGTTGCTGCAGATGAAGATGCAGGAGGGG CTGGGGATAGCATTGCACATGGACTTCATGATGTCCTTGAATCTGAAAATAACCACAAACAGATAATAGATCAGAGTAGTGGAGCAGTTTCTGGTACTAA AATAAAACTTGAAGCGTCAGCACTTGGTCTTTTAGCTTTAAATTATGGAGATTCATCCGACATGGATGAAGAACCAGGTTTATCTCCCGATAATAATGAC ACATATGATAGGATGAATAGTTTATCAGAAGGTAACCATCAGTCTCAGGACTCTGCTTCACCATCCCTTGAGGAAGAACTGCCTGATGGTACATCTCGAC ACAAATTTGATTATGGGAACAGAGTGTTTCTCCAGGGTGTAGAGAATAATATGCAACAATTAGAAAGTACCGATCCTTTGCTTGCTCCTACATGCGATGA AGACTCTTCCCGTATGCATGTCTTCTGCCTTGAGCATGCTGTTGAAGTAGAACAACGACTTCGCCAAATAGGAGGAGTACACGTGTTTCTTCTCTGCCAT CCAGATTATCCTGGGATAGAGGAGCAGGCAAAGTTAGTTTCCGAAGAACTGCGGGTTGATTACTTGTGGAAGCAAACCAATTACAAGGATGCAAGCATAG ATGATGAACAGAGGATCCAATCAGTTCTTGATAGTGAAGAGGCCATTCCAGGGAACAGCGACTGGGCTGTGAAACTGGGGATCAATCTTTTCTATAGTGC TAATCTTAGTTGGTCACCGCTTTATAGTAAGCAGATGGCATACAATTCCGTGATATACAATGCATTTGGCCGTACCTCTCCAGGAAGCTCGCCTAAAAAG TCTAATAATGTCTCTGGACGGAGGAACGGTAGGCAGAGAAAGGCAGTGGTTGGTAAATGGTGTGGCAAAGTTTGGATGTCAAATCAAGTCCATCCGTTTC TAATAAATTGGGATTCCCAGTATCAAGACCAGGAGCAAGAACCAGAAAAGCTTGATGTTCAACAACCACATGTCTTTGAAACAGAAACTTCAAGAAAATC TGTCAAATCTGTGAAGAAAAGAAAACCTAAAGCCAAGAGTGTATCTGTTAGGGAAGTGGCTCTTGCAGAGATTGAGGAGATTGCTTCAGATGATTTAGGG CGTGTTTCTCGTAAGCCACTTGGGAGGTTAAACAACAGGAAGCGAACCAATTCAGTTGAGGAGCGTGAGAGCTTGCATAGAAGCAAGCTGGCCAGATCTG CTGTGAATGAGTATGTAGATTCAGAAGATTCTTTAGGAGACGAATCTCTTCAGCAGCAGCAGAAGAAAACTATAAGCCAACAAACTAGAGAATTTGACTG TGAACGTGCAGACTTCTACGACACAGTTCGTAAAACCTCGCAAAAACAACGCAGAACTCCTAGAGTCTGTCAGGCTAAATATGTTCAGAAAGAATCTGCT TCAGATGATTCTTTAGAAGAAAACATGCTTCAATGGCATGGAAGGGTTCCTAGAAGTAAGCAACAAATGAAACTAATGAACAGAGAAGAAGTTTCCGGGC TTCCACTAGAAGAGAGTTCTCAGAAGTCCCCTAAGGTCTATAAAAGGAGAAAGGGAAAATATGCGGAGAAGGAATATGCAGCGCCAAGCGAGTCGATAGA AAATGTTTATCATAGACAGAACAGCTTGACTCCTGAAGGCAAGCAGTTCGAAGAAGCTGAGTTTGATGATTCTCTAGACGAAAGTGTTAAGTGGCAAACT GCGAGCTTTTCTAGGGAAGATTTAATGTCTGATGATTCAGTGTACAATGATGATACTCATCAGCAAAGGGGAACTGCTAGAGGCAAAAATCCCTTGTCTT ATTCAGCAGAAGATGCAGTATCAGATGATCCGTTAGATACGGATACCCATCAGCTGGAGAGAACCATTCCTCGAATCGGAAGGTCTAGATCTTTTGGAGA TGAAGATGCAGTTTCAGATGACCTGTTGCAGGAGGATGATATTGAACAGAACTTCAGGAGCATCCACCAAAACAAGAGGGCCAAATTTTCAGAAAGACAG GCGGAGATTACAGATGAGCTGCGAAATAATAGTACTCGCCGCTATCCAAGGAAGACCCCGAGAGGGAAGCACGGTAGATTCATCAAGGGGGAGATTGAAG ATGCAGATTCTGATCATTTGGTGGGAGAGGATTTCAATGAGCAGCAGGGGAGGACACTTAGAAGCAAGCAGAAAAGACCCCGAACTCCTCCATCAGGGAA GAAGTCTATGCAAAAAGAGACTCCTTTGAGGCCGGTTAAGCTGGAAACTCCTCGCATGAGGAACAAGGGAAATGCTTACCAGTTTGATGATGTCCCAGCT GATGATGATGAAGAAGAGGGCGGACCTAGCTCACGCTTGAGGAGAAGGCCCTCGAAACCTACAAAAGTGTCGGTATCTAAATCAAAAGAGATTCAGCAGC AGCAAAGCAGCAGGATTAAAGTGAAGTCTGCCCCGGCAGGGAAGGCCCCTGCGGGAAGGAAGAGTGGGAAAAACAAAGTGGAGGATGGACAATTCCACTG TGATATTGACGGTTGCACCATGGGTTTTAGCTCAAAGCAAGAGCTTAATATCCACAAAAGAAATATTTGCCCAGTGAAGGGATGTGGTAAGGTGTTCTTC TCACACAAGTATCTAGTGCAGCATCGACGAGTCCATGTAGACGATAGGCCCCTCAAGTGCCCATGGAAAGGCTGCAAGATGGCGTTCAAGTGGGCATGGG CGAGGACTGAACACATCAGGGTTCACACGGGTGCACGGCCTTACGTGTGTGCAGAAGAAGGTTGCGGTCAGACATTCCGGTTTGTGTCGGATTTCAGCCG TCACAAGAGGAAGACTGGGCATTCAGGCAGGAAAGACAGCGAGTAA
AA sequence Show only first row Show all	>Lus10019482 pacid=23181502 polypeptide=Lus10019482 locus=Lus10019482.g ID=Lus10019482.BGIv1.0 annot-version=v1.0 MAASGGLAAEREDVLQWLRNLPLAPEYHPTLAEFQDPIAYIFKIEKEASKYGICKIVPPVLQSPKKTAIANLNRSLAARVVGGASSSSSSPPTFTTRQQQ IGFCPRKPRPVQKPVWQSGENYTFQEFESKAKSFEKSYFKKYAKKGTTLSPLEIETLYWKATVDKPFSVEYANDMPGSAFPVKKNSGIVVEGMSVGETEW NMRGVARAKGSLLRHMKEEIPGVTSPMLYIAMMFSWFAWHVEDHDLHSLNYMHMGAGKTWYGVPKEAAVAFEEVVRVHGYGGEINPLRECSFQQNSCLSV DHLARLITFAVLGEKTTVMSPEVFIRAGVPCCRLVQNAGEFVVTFPRAYHSGFSHGKVAVYLQFPLWFNCGEASNIATPEWLRFAKEAAVRRASINYPPM VSHFQLLYDLASELCSRFTTNASAKPRSSRLKDKQKGESEMVTKEILVENVMNNNNLLHNLGKGASVVLLPRSSSDISLCSNYRFGSQFVKPSFGLRAHK GFMGQSKVSGYDDSKPDKIDVINQVKDMYPLKAKFGSSYEGQTCPVLGKSGNLHNPHPETEKIAMLDNKSPDQRLFSCVTCGILNYDCVAIIQPREAAAR YLMSADCSFFNDWTVVSGAGKEAHVAADEDAGGAGDSIAHGLHDVLESENNHKQIIDQSSGAVSGTKIKLEASALGLLALNYGDSSDMDEEPGLSPDNND TYDRMNSLSEGNHQSQDSASPSLEEELPDGTSRHKFDYGNRVFLQGVENNMQQLESTDPLLAPTCDEDSSRMHVFCLEHAVEVEQRLRQIGGVHVFLLCH PDYPGIEEQAKLVSEELRVDYLWKQTNYKDASIDDEQRIQSVLDSEEAIPGNSDWAVKLGINLFYSANLSWSPLYSKQMAYNSVIYNAFGRTSPGSSPKK SNNVSGRRNGRQRKAVVGKWCGKVWMSNQVHPFLINWDSQYQDQEQEPEKLDVQQPHVFETETSRKSVKSVKKRKPKAKSVSVREVALAEIEEIASDDLG RVSRKPLGRLNNRKRTNSVEERESLHRSKLARSAVNEYVDSEDSLGDESLQQQQKKTISQQTREFDCERADFYDTVRKTSQKQRRTPRVCQAKYVQKESA SDDSLEENMLQWHGRVPRSKQQMKLMNREEVSGLPLEESSQKSPKVYKRRKGKYAEKEYAAPSESIENVYHRQNSLTPEGKQFEEAEFDDSLDESVKWQT ASFSREDLMSDDSVYNDDTHQQRGTARGKNPLSYSAEDAVSDDPLDTDTHQLERTIPRIGRSRSFGDEDAVSDDLLQEDDIEQNFRSIHQNKRAKFSERQ AEITDELRNNSTRRYPRKTPRGKHGRFIKGEIEDADSDHLVGEDFNEQQGRTLRSKQKRPRTPPSGKKSMQKETPLRPVKLETPRMRNKGNAYQFDDVPA DDDEEEGGPSSRLRRRPSKPTKVSVSKSKEIQQQQSSRIKVKSAPAGKAPAGRKSGKNKVEDGQFHCDIDGCTMGFSSKQELNIHKRNICPVKGCGKVFF SHKYLVQHRRVHVDDRPLKCPWKGCKMAFKWAWARTEHIRVHTGARPYVCAEEGCGQTFRFVSDFSRHKRKTGHSGRKDSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10019482 [exp]	0	1
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10043332 [exp]	1.0	0.9829
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Lus10020862 [exp]	1.4	0.9605
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10040493 [exp]	1.7	0.9554
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10033404 [exp]	4.5	0.9427
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10006070 [exp]	4.9	0.9500
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10022945 [exp]	6.7	0.9323
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10023443 [exp]	7.3	0.9380
AT4G31880			unknown protein		Lus10018332 [exp]	7.5	0.9383
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10033983 [exp]	8.7	0.9273
AT4G38760			Protein of unknown function (D...		Lus10007578 [exp]	8.8	0.9401

Compare expression of checked genes

Lus10019482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.