Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48425 555 / 0 DNAse I-like superfamily protein (.1) AT2G41460 108 / 1e-25 ARP apurinic endonuclease-redox protein (.1.2) AT3G60950 57 / 1e-08 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT3G61030 47 / 2e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043333 [exp] 726 / 0 AT3G48425 549 / 0.0 DNAse I-like superfamily protein (.1) Lus10000437 [exp] 101 / 2e-23 AT2G41460 541 / 0.0 apurinic endonuclease-redox protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G088900 [exp] 601 / 0 AT3G48425 557 / 0.0 DNAse I-like superfamily protein (.1) Potri.016G042000 [exp] 100 / 4e-23 AT2G41460 590 / 0.0 apurinic endonuclease-redox protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10019483 pacid=23181568 polypeptide=Lus10019483 locus=Lus10019483.g ID=Lus10019483.BGIv1.0 annot-version=v1.0 ATGAAACGATTCTTCAAGCCGATAGAGAAGGATGGGTCTGCGAAGAAACCTGCGCTAGAACAGCAACAACAGCAAGGCAATGGCGAAAAGCTAGACGGGA TAGCAGAGTCGGGAGCTGGGCTGCCGAATCAGAACATGCAGCCGTTGAAGTTCGTCACTTGGAATGCTAATAGCTTTCTTCTTCGAGTAAAAAACAACTG GCCCGAGTTTTCAAAGCTCGTCTCCCGCATTGACCCTGATGTCATCGCCGTCCAGGAAGTAAGAATGCCAGCTGCTGGTTCTAAAGGTGCACCCAAGAAC CCAGGAGAGATAAAAGATGATACAAGCTCTTCACGGGAGGAAAAACAGTTACTGATGCGTGCTCTTTCTCGTCCGCCATTTGGAGATTATCATGTTTGGT GGTCCCTTGGTGACACCAAGTATGCTGGAACTGCCTTGTTGGTAAAGAAGTGTTGCCAGCCTTTGAAGGTCTCTTTCGCACTTGATAGAACAGGTTCTAA ACATGAACCGGATGGGCGAGTTATTTTAGCTGAATTTGAGAAGTTCCGCCTATTGAATACATATGCACCAAATAATGGATGGAAAGATGAGGAAAACGCA TTTCAAAGGAGAAGGAAATGGGATAAAAGGATGCTAGATTTTGTTCTTCAAGCATCCGACAAACCTTTGATATGGTGCGGTGATCTGAATGTTAGTCTAG GAGACATAGATGTGAGTCATCCAGAATTTTTCAGTACGGCAAAGCTCAATGGTTACAGACCTCCCAATGAAGAGGATTGCGGGCAGCCTGGATTTACCCT GAACGAGAGGAAGCGATTTGGTGCAATACTGAAAGAGGGAAAACTCACAGATGCATACCGATTCTTGCACAAGGAAAAGGATATGGAGCATGGTTTCTCA TGGTCTGGGAATCCCATTGGGAAGTACCGAGGGAAAAGGATGCGGATAGATTATTTTTTGGTCTCTGAGAAACTGAGAGATCGAATTGTTTCCTGTGAGA TGCATGGCCAAGGAATTGAACTAGAAGGCTTTTATGGAAGTGACCATTGTCCAGTTTCGCTTCAACTGTCAGCAATCACGTCAGATGCCAACGGAAGCTA A
AA sequence Show only first row Show all	>Lus10019483 pacid=23181568 polypeptide=Lus10019483 locus=Lus10019483.g ID=Lus10019483.BGIv1.0 annot-version=v1.0 MKRFFKPIEKDGSAKKPALEQQQQQGNGEKLDGIAESGAGLPNQNMQPLKFVTWNANSFLLRVKNNWPEFSKLVSRIDPDVIAVQEVRMPAAGSKGAPKN PGEIKDDTSSSREEKQLLMRALSRPPFGDYHVWWSLGDTKYAGTALLVKKCCQPLKVSFALDRTGSKHEPDGRVILAEFEKFRLLNTYAPNNGWKDEENA FQRRRKWDKRMLDFVLQASDKPLIWCGDLNVSLGDIDVSHPEFFSTAKLNGYRPPNEEDCGQPGFTLNERKRFGAILKEGKLTDAYRFLHKEKDMEHGFS WSGNPIGKYRGKRMRIDYFLVSEKLRDRIVSCEMHGQGIELEGFYGSDHCPVSLQLSAITSDANGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48425			DNAse I-like superfamily prote...		Lus10019483 [exp]	0	1
					Lus10024697 [exp]	3.2	0.8276
					Lus10028270 [exp]	4.5	0.8156
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	5.5	0.8388
AT2G04940			scramblase-related (.1)		Lus10004532 [exp]	5.5	0.8239
AT5G44560		VPS2.2	SNF7 family protein (.1.2)		Lus10038407 [exp]	6.5	0.8080
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008854 [exp]	7.5	0.8164
AT4G17760			damaged DNA binding;exodeoxyri...		Lus10030971 [exp]	11.2	0.8056
AT5G59750			DHBP synthase RibB-like alpha/...		Lus10040865 [exp]	13.0	0.7692
AT1G60560			SWIM zinc finger family protei...		Lus10025765 [exp]	13.3	0.7953
AT3G52170			DNA binding (.1.2)		Lus10028828 [exp]	15.5	0.7727

Compare expression of checked genes

Lus10019483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.