Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63120 700 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 634 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 407 / 1e-134 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 398 / 8e-131 DEAD box RNA helicase family protein (.1.2) AT3G06480 390 / 3e-123 DEAD box RNA helicase family protein (.1) AT1G20920 361 / 2e-114 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G47330 352 / 9e-112 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G31970 321 / 3e-102 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G09620 316 / 4e-96 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 294 / 5e-91 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043334 [exp] 821 / 0 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015627 [exp] 639 / 0 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 637 / 0 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10032135 [exp] 401 / 8e-132 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032133 [exp] 397 / 5e-130 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10001272 [exp] 399 / 9e-126 AT5G14610 665 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10014553 [exp] 384 / 1e-123 AT5G14610 833 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10009474 [exp] 377 / 2e-117 AT3G06480 744 / 0.0 DEAD box RNA helicase family protein (.1) Lus10037527 [exp] 358 / 6e-114 AT2G47330 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G084600 [exp] 732 / 0 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.015G083000 [exp] 724 / 0 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G038300 [exp] 648 / 0 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.017G071400 [exp] 414 / 3e-135 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.001G347100 [exp] 413 / 8e-135 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 397 / 5e-125 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.002G194600 [exp] 363 / 1e-115 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G003600 [exp] 364 / 7e-113 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G257400 [exp] 357 / 5e-110 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G098800 [exp] 324 / 3e-103 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10019484 pacid=23181614 polypeptide=Lus10019484 locus=Lus10019484.g ID=Lus10019484.BGIv1.0 annot-version=v1.0 ATGAACCCTTATGATCCTAGATACAACGACCCAGAATCCTACCGTCATCGTCGCAGTGATTTCATTGGACCTCCTCCAATGATGGGCGGTGGTCCGTATC CGCGGGGAGGACCAATGCCCTACGGTGGGCATCCCCCACCACTGCCATTTGCAACAGGAGGCGGTCCTGGGATTTCTGACGGATATCCACCTTTTCACCC TCCTGCCGGTAGGTTTGATATTGGTCGTGGAGGCGGGGGCAGTAGGGGATATGGCGATGGTGGTGGTCGGTTCGATGGTGGTCGTTCCGGTGGCGGGAGG GGCCGTGACGGCGGTTATTACGGTGGTGGACGTGGTGGTGGTGGTGGTGGTGGTGGTGGAATGAGTTATGGGGGAAGAGGAGGATGTAGGTTTGGCGGTG GAGCTCCGCGAGGCGATTTAGATAATATCTCACTCCCCAGTCAGGACTTTGGAAACTTGGTGCCGTTTGAGAAGAGTTTCTACATGGAGAGTCCTGCAGT TCGGGCTATGTCCGAGCAAGATGTCATGATTTATCGATCAAGAAGGGACATTACTGTTGAAGGGCTTGAGGTGCCTAGGCCAATTCGGATGTTTCAGGAG GCCAACTTCCCAGACTACTGCCTAGACGTGATTGCTAAGCTCGGTTTTGTTGAGCCGACACCAATTCAGGCTCAAGGCTGGCCCATGGCTCTAAAGGGTA GAGATTTGATTGGTATTGCCGAGACAGGTTCTGGCAAGACACTGGCTTACCTCTTGCCTGCTCTGGTTCATGTTAGCGCACAACCTCGATTGACCCAAGG TGATGGTCCAATTGTATTGGTACTGGCTCCTACAAGAGAATTAGCAGTTCAAATTCAAGAAGAGGCTGCAAAGTTTGGTGCCCGTGCTAATACTAGGAGT ACTTGTGTATATGGTGGTGCACCAAAAGGCCCCCAGATTCGTGATCTCAGAAGAGGTGTTGAGATTGTCATTGCTACCCCGGGTCGTCTTATTGATATGT TGGAAGCTCAACATACAAACTTGCGAAGGGTTACTTACCTAGTATTAGATGAGGCTGACAGGATGTTGGACATGGGATTTGAACCCCAGATCAGGAAGTT GATATCTCAAATCCGGCCTGATAGACAAACATTGTATTGGAGTGCGACATGGCCAAAAGAAGTTGAAACATTGGCTAGGCAGTTTCTGCATAATCCATAC AAGGTAATTATTGGCTCGCCAGATCTGAAAGCCAACCAGTCAATAATTCAAGTAATTGAAGTTGTCACAGAGGTTCAGAAGTACAATAGACTGGTCAATC TTCTGAAAGAAGTAATGGATGGTAGCAAGATTCTCATATTTACAGAGACAAAAAAGGGCTGTGACCAAATCACAAGGCAATTGAGAATGGATGGTTGGCC TGCTCTATCCATCCATGGAGACAAAAATCAGGCTGAAAGGGATTGGGTTCTTTCAGAATTCAAGAGCGGCAGAAGTCCTGTAATGACTGCCACTGATGTT GCTGCTCGTGGTCTTGATGTGAAGGATATAAAATGTGTGATCAACTATGACTTCCCTACCAGTCTGGAAGACTATATTCACAGGATAGGGCGAACTGGGC GTGCTGGTGCAAAAGGAACTGCCTTTACCTTCTTTACACATGCAAATGCAAAATTTGCAAGAGAGCTCATCAAGATCTTGACAGAAGCACGGCAGATCGT GCCTCCGCCATTGTCGGAACTAGCAAGAGCATCTGGTTCTTATGGAGGAGGAAACTTCAGATCCAGGGGACGAGGAGGAGGAGGAGGTGGTGGTGGCTAT GGCAACCGATCGGGCTCGAATATGACGCTTCTGGGATCCAAGAGGCACTGGTAG
AA sequence Show only first row Show all	>Lus10019484 pacid=23181614 polypeptide=Lus10019484 locus=Lus10019484.g ID=Lus10019484.BGIv1.0 annot-version=v1.0 MNPYDPRYNDPESYRHRRSDFIGPPPMMGGGPYPRGGPMPYGGHPPPLPFATGGGPGISDGYPPFHPPAGRFDIGRGGGGSRGYGDGGGRFDGGRSGGGR GRDGGYYGGGRGGGGGGGGGMSYGGRGGCRFGGGAPRGDLDNISLPSQDFGNLVPFEKSFYMESPAVRAMSEQDVMIYRSRRDITVEGLEVPRPIRMFQE ANFPDYCLDVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLTQGDGPIVLVLAPTRELAVQIQEEAAKFGARANTRS TCVYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKLISQIRPDRQTLYWSATWPKEVETLARQFLHNPY KVIIGSPDLKANQSIIQVIEVVTEVQKYNRLVNLLKEVMDGSKILIFTETKKGCDQITRQLRMDGWPALSIHGDKNQAERDWVLSEFKSGRSPVMTATDV AARGLDVKDIKCVINYDFPTSLEDYIHRIGRTGRAGAKGTAFTFFTHANAKFARELIKILTEARQIVPPPLSELARASGSYGGGNFRSRGRGGGGGGGGY GNRSGSNMTLLGSKRHW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63120			P-loop containing nucleoside t...		Lus10019484 [exp]	0	1
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10013726 [exp]	1.0	0.8113
AT5G63120			P-loop containing nucleoside t...		Lus10043334 [exp]	2.6	0.7715
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10001006 [exp]	3.7	0.7583
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10035713 [exp]	6.9	0.7744
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Lus10024952 [exp]	7.7	0.7824
AT3G20240			Mitochondrial substrate carrie...		Lus10033351 [exp]	13.2	0.7914
AT5G64600			O-fucosyltransferase family pr...		Lus10020882 [exp]	33.0	0.7313
AT5G15070			Phosphoglycerate mutase-like f...		Lus10032191 [exp]	53.0	0.7459
AT4G01290			unknown protein		Lus10007916 [exp]	56.3	0.7041
AT1G15780			unknown protein		Lus10025452 [exp]	62.2	0.6863

Compare expression of checked genes

Lus10019484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.