Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42490 1128 / 0 Copper amine oxidase family protein (.1) AT1G31690 215 / 3e-60 Copper amine oxidase family protein (.1) AT1G31710 204 / 3e-56 Copper amine oxidase family protein (.1) AT3G43670 190 / 2e-51 Copper amine oxidase family protein (.1) AT4G12290 190 / 4e-51 Copper amine oxidase family protein (.1) AT1G62810 186 / 5e-50 Copper amine oxidase family protein (.1) AT1G31670 186 / 9e-50 Copper amine oxidase family protein (.1) AT4G14940 173 / 8e-46 ATAO1 amine oxidase 1 (.1) AT4G12270 118 / 6e-28 Copper amine oxidase family protein (.1) AT4G12280 96 / 2e-21 copper amine oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026696 [exp] 1157 / 0 AT2G42490 1208 / 0.0 Copper amine oxidase family protein (.1) Lus10004618 [exp] 1154 / 0 AT2G42490 1207 / 0.0 Copper amine oxidase family protein (.1) Lus10010540 [exp] 228 / 4e-65 AT1G31710 761 / 0.0 Copper amine oxidase family protein (.1) Lus10004912 [exp] 217 / 6e-61 AT1G31710 738 / 0.0 Copper amine oxidase family protein (.1) Lus10010542 [exp] 215 / 2e-60 AT1G31710 753 / 0.0 Copper amine oxidase family protein (.1) Lus10026757 [exp] 193 / 2e-52 AT1G31690 727 / 0.0 Copper amine oxidase family protein (.1) Lus10024568 [exp] 187 / 6e-50 AT1G62810 914 / 0.0 Copper amine oxidase family protein (.1) Lus10024571 [exp] 185 / 3e-49 AT4G12290 993 / 0.0 Copper amine oxidase family protein (.1) Lus10032209 [exp] 184 / 9e-49 AT4G12290 996 / 0.0 Copper amine oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G082900 [exp] 1159 / 0 AT2G42490 1256 / 0.0 Copper amine oxidase family protein (.1) Potri.012G084400 [exp] 1158 / 0 AT2G42490 1250 / 0.0 Copper amine oxidase family protein (.1) Potri.010G045600 [exp] 1143 / 0 AT2G42490 1202 / 0.0 Copper amine oxidase family protein (.1) Potri.008G151900 [exp] 217 / 7e-61 AT1G31690 793 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088800 [exp] 214 / 6e-60 AT1G31710 782 / 0.0 Copper amine oxidase family protein (.1) Potri.010G089050 [exp] 212 / 3e-59 AT1G31710 780 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088900 [exp] 204 / 3e-56 AT4G14940 904 / 0.0 amine oxidase 1 (.1) Potri.001G118300 [exp] 196 / 5e-53 AT4G12290 1060 / 0.0 Copper amine oxidase family protein (.1) Potri.001G118200 [exp] 187 / 5e-50 AT1G62810 961 / 0.0 Copper amine oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01179 [flax] [poplar] Cu_amine_oxid Copper amine oxidase, enzyme domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02728 [flax] [poplar] Cu_amine_oxidN3 Copper amine oxidase, N3 domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02727 [flax] [poplar] Cu_amine_oxidN2 Copper amine oxidase, N2 domain
Representative CDS sequence Show only first row Show all	>Lus10019485 pacid=23181551 polypeptide=Lus10019485 locus=Lus10019485.g ID=Lus10019485.BGIv1.0 annot-version=v1.0 ATGGCCTCAGCTCAGGAAAAAGCGAAGATTCCTTCCTCTTCTTCTTCTTCTTCTAATTCTGCCTGCTGTGGTGGAGATTCCCGTTCTGTTATTCCCCGTC AGGCTTCTGTCACTCAGTCCCCTGTTCCTGAGAATGCCGTCCAGGATTGGACTGTTCCTCCCGCCGATCGTCGCCGGAGAGACGATCAGATCGGCGTCAA GGCTATCACGCCCTTGATTGCTCCTCCGGTCGACTCCCTTCCTGAATCTTCAGCCAATTTGGCCGCCAAAGGCATCCCAGTCTTGTTCAGGGTACAATCA AGCCATCCATTGGATCCTTTGTCCGCGGCTGAAATCTCAGTAGCCGTGGGTACTGTAAGAGCTGCAGGAGCCACTCCCGAGGTTCGAGATAGCATGAGAT TCATTGAGGTGGTTCTCCAAGAACCTGATAAACATGTTGTTGCGCTAGCAGACGCATATTTCTTTCCTCCTTTTCAGCCATCATTGCTTCCTAGGACCAA AGGTGGTCCCATAATCCCTACCAAGTTGCCTCCCAGGAGAGCTAGACTTGTTGTGTACAACAAAACGTCTAATGAGACAAGCGTCTGGATAGTGGAACTG TCAGAAGTACATGCTGCCACTCGTGGTGGACATCATAGGGGAAAGGTGGTGTCATCCGAAGTTATTCCAGATGTTCAGCCCCCAATGGATGCCGCAGAAT ATGCTGACTGTGAAGCTGCCGTGAAAGAGTACCCTCCATTTATAGAGGCAATGAAAAAGCGGGGAATTGAAGACATGGAACTAGTTATGGTTGATGCATG GTGTGTTGGTTATCACAGTGAAGCTGATGCACCTAGCAAAAGACTGGCCAAACCTCTTATATTCTGTAGAACAGAGAGTGACTGTCCAATGGAAAATGGT TATGCACGACCTGTTGAGGGTATTTTCATTCTTGTGAACATGCAAAACATGGAGGTGATTAAATTCGAGGATCGAAAGCTTGTTCCATTACCCCCAGCAG ATCCTTTAAGGAACTACACTCCTGGTGAAACGAGAGGAGGTGTTGACCGCAGCGATATCAAACCATTACAAATTGTTCAACCTGAAGGCCCTAGTTTTCG GGTCAGTGGGAACTATGTAGAATGGCAGAAGTGGAACTTCCGCGTTGGATTTACGCCTAGGGAGGGCTTGGTGATACATTCAGTTGCATATACTGATGGC AGTAGAGGTCGAAGGCCCGTAGCCCACAGGCTAAGCTTCGTAGAGATGGTTGTGCCTTATGGAGATCCTGAGGATCCTCATTACCGGAAAAATGCATTTG ATGCAGGGGAAGATGGTCTTGGTAAAAATGCTCATTCTCTTAAGAAGGGATGTGATTGTTTGGGCTATATCAAATACTTTGATGCCCACTTCACAAACTT CACTGGAGGTGTTGAAACTATTGAAAATTGTGTCTGTTTGCATGAGGAGGATCACGGAATGCTGTGGAAGCATCAGGACTGGAGAACAGGCTTAGCTGAA GATGGAAAAATTGAAGCTGAAGTTAAACTCACTGGAATCCTTAGCTTGGGAGCATTGCAACCTGGAGAAGTAAGGAAGTATGGTACAACGATTGCCCCTG GACTGTATGCACCAGTTCATCAACACTTTTTTGTTGCTCGTATGAATATGGCGGTTGATTGCAAATCTGGTGAGGCTTTTAATCAGGTTGCTGAGGTGAA TGTTAAAATTGAGGAACCTGGGGAAAAGAATGTGCACAATAATGCATTTTATGCTGAAGAGACACTGCTCAGATCAGAATCACAAGCCATGAGGGACTGT AACTCGTTATCAGCACGGCATTGGATTATAAGAAACACTAGGACTGTGAACAGGACTGGACAACTGACTGGGTACAAGCTAATGCCTGGTTCGAATTGCT TGCCCTTAGCTGGTCCGGAAGCAAAGTTCTTGAGGAGGGCAGCGTTTCTGAAGCACAATCTATGGGTGACACCATATGCACGTGGTGAGATGTTTCCTGG AGGAGAATTTCCTAATCAAAATCCCAGAGTTGGTGAAGGGCTGGCGACATGGGTCAAGCAGGATAGGCAATTGGAAGAAAATGACATTGTTCTTTGGTAC ATATTTGGGGTGACCCACGTCCCAAGGTTGGAGGACTGGGCCAAGTGCGTGCGAATTGGACGTCAAGGAAACTGA
AA sequence Show only first row Show all	>Lus10019485 pacid=23181551 polypeptide=Lus10019485 locus=Lus10019485.g ID=Lus10019485.BGIv1.0 annot-version=v1.0 MASAQEKAKIPSSSSSSSNSACCGGDSRSVIPRQASVTQSPVPENAVQDWTVPPADRRRRDDQIGVKAITPLIAPPVDSLPESSANLAAKGIPVLFRVQS SHPLDPLSAAEISVAVGTVRAAGATPEVRDSMRFIEVVLQEPDKHVVALADAYFFPPFQPSLLPRTKGGPIIPTKLPPRRARLVVYNKTSNETSVWIVEL SEVHAATRGGHHRGKVVSSEVIPDVQPPMDAAEYADCEAAVKEYPPFIEAMKKRGIEDMELVMVDAWCVGYHSEADAPSKRLAKPLIFCRTESDCPMENG YARPVEGIFILVNMQNMEVIKFEDRKLVPLPPADPLRNYTPGETRGGVDRSDIKPLQIVQPEGPSFRVSGNYVEWQKWNFRVGFTPREGLVIHSVAYTDG SRGRRPVAHRLSFVEMVVPYGDPEDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGLAE DGKIEAEVKLTGILSLGALQPGEVRKYGTTIAPGLYAPVHQHFFVARMNMAVDCKSGEAFNQVAEVNVKIEEPGEKNVHNNAFYAEETLLRSESQAMRDC NSLSARHWIIRNTRTVNRTGQLTGYKLMPGSNCLPLAGPEAKFLRRAAFLKHNLWVTPYARGEMFPGGEFPNQNPRVGEGLATWVKQDRQLEENDIVLWY IFGVTHVPRLEDWAKCVRIGRQGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42490			Copper amine oxidase family pr...		Lus10019485 [exp]	0	1
AT2G35610		XEG113	xyloglucanase 113 (.1)		Lus10005034 [exp]	6.0	0.6868
AT4G31080			Protein of unknown function (D...		Lus10009546 [exp]	8.6	0.7393
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10030703 [exp]	9.0	0.7432
AT5G47040		LON2	lon protease 2 (.1)		Lus10011038 [exp]	13.4	0.6936
AT1G68100		IAR1	IAA-ALANINE RESISTANT 1, ZIP m...		Lus10026186 [exp]	14.5	0.7044
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10009686 [exp]	15.0	0.7000
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	16.2	0.7347
AT5G04770		CAT6, ATCAT6	ARABIDOPSIS THALIANA CATIONIC ...		Lus10000962 [exp]	22.0	0.6834
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10035104 [exp]	25.3	0.7322
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10027657 [exp]	28.2	0.7021

Compare expression of checked genes

Lus10019485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.