Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63110 699 / 0 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) AT4G38130 585 / 0 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT5G35600 491 / 1e-172 HDA7 histone deacetylase7 (.1) AT3G44680 471 / 1e-164 HDA09, HDA9 histone deacetylase 9 (.1) AT3G44490 113 / 2e-29 HDA17 histone deacetylase 17 (.1) AT3G18520 114 / 5e-27 HDA15, ATHDA15 histone deacetylase 15 (.1.2) AT1G08460 108 / 1e-25 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1) AT5G61060 108 / 7e-25 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2) AT5G61070 100 / 3e-22 HDA18, ATHDA18 A. THALIANA HISTONE DEACETYLASE OF THE RPD3/HDA1 SUPERFAMILY 18, histone deacetylase of the RPD3/HDA1 superfamily 18 (.1) AT4G33470 91 / 1e-19 HDA14, ATHDA14 histone deacetylase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043337 [exp] 767 / 0 AT5G63110 629 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10001605 [exp] 585 / 0 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10001356 [exp] 555 / 0 AT4G38130 809 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10020570 [exp] 486 / 3e-170 AT3G44680 806 / 0.0 histone deacetylase 9 (.1) Lus10006274 [exp] 473 / 7e-164 AT3G44680 756 / 0.0 histone deacetylase 9 (.1) Lus10034689 [exp] 115 / 3e-27 AT5G61060 876 / 0.0 histone deacetylase 5 (.1.2) Lus10024919 [exp] 110 / 6e-26 AT3G18520 622 / 0.0 histone deacetylase 15 (.1.2) Lus10022906 [exp] 108 / 5e-25 AT3G18520 582 / 0.0 histone deacetylase 15 (.1.2) Lus10001850 [exp] 101 / 3e-23 AT1G08460 558 / 0.0 histone deacetylase 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G082500 [exp] 783 / 0 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.012G083800 [exp] 742 / 0 AT5G63110 716 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.009G170700 [exp] 586 / 0 AT4G38130 811 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.004G209800 [exp] 581 / 0 AT4G38130 815 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.001G460000 [exp] 475 / 5e-166 AT3G44680 739 / 0.0 histone deacetylase 9 (.1) Potri.004G092900 [exp] 113 / 1e-26 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.012G060400 [exp] 100 / 4e-22 AT3G18520 637 / 0.0 histone deacetylase 15 (.1.2) Potri.009G020500 [exp] 93 / 1e-20 AT1G08460 552 / 0.0 histone deacetylase 8 (.1) Potri.005G064200 [exp] 90 / 2e-19 AT4G33470 622 / 0.0 histone deacetylase 14 (.1) Potri.006G230300 [exp] 68 / 3e-12 AT5G26040 575 / 0.0 histone deacetylase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [flax] [poplar] Arginase PF00850 [flax] [poplar] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Lus10019486 pacid=23181577 polypeptide=Lus10019486 locus=Lus10019486.g ID=Lus10019486.BGIv1.0 annot-version=v1.0 ATGGAAGACTCAACTAGCGGCGCTTCTCTTCCGTCCGTCGGTACCGACGCCAAGAAGCGACGGGTGACCTACTTCTACGAACCCACCATCGGCGACTACT ACTACGGCCAGGGACACCCGATGAAGCCCCACCGTATCCGTATGGCCCACAACTTAATCGTCCACTACTCCCTCCACCGCCGCATGGAGATCAACCGCCC TTTCCCCGCCGGGCCCAACGACATCCGCAAATTCCACTCCGACGAATACGTCGACTTCCTCTCCACCATTACCCCTTCCGCTGTATCTGACCCTCTCAAC CATCGCCATCTCAAGAGGTTCAACGTTGGGGAGGACTGTCCTGTCTTCGACGGCATTTTCGGATTCTGCCAGGCTTCTACCGGTGGCTCGATTGGGGCTG CCGTCAAGCTCAATCGAGGGGACGCTGATATCGCAATTAATTGGGCCGGCGGATTGCATCATGCGAAGAAGAGTGAAGCCTCTGGGTTTTGTTATGTGAA TGATATTGTGCTTGGGATTCTGGAGATGCTCAAGGTTCACAAGCGTGTACTGTATGTGGACATTGACGTTCACCATGGAGATGGTGTTGAGGAAGCATTC TATACAACTGATAGGGTGATGACGGTGTCATTCCACAAATTCGGGGATTTCTTTCCAGGAACTGGGCACATTAGGGATGTTGGTGCTGGGCAAGGGAAGA GCTATGCCCTGAACATCCCATTGAATGATGGAATGGATGATGAAAGTTTTAAGAGCCTGTTTCAGCCCATAATGATCAAAGTTATGGAGGTTTATCAGCC TGATGCTGTTGTTCTCCAATGTGGAGCAGATTCTTTGACGGGTGACAGGTTGGGTTGCTTCAACTTGTCCGTAAAGGGTCATGCTGAGTGCCTCCGTTTT CTTAGGTCCTTCAACGTTCCTATGATGGTTTTAGGTGGTGGTGGGTACACAATCCGTAATGTAGCTCGCTGTTGGTGTTATGAGACGGCAGTAGCAGTTG GAGTTGAACCTGATAACAAATTACCTTACAATGAATATTATGAGTACTTTGGCCCTGACTATACACTTCATGTAGAGCCTTCGAATATAGAAAACCTAAA CACACCGAAAGATATCGAGAAAATTAGGAACATACTGCTGGAACAACTCTCAAGACTTCCGAATTCACCAAGCGTGCCTTTTCAGATGACACCATCCGTG ACTGAAGTTCCAGAAGAGGACGAAGAGGAGATGGATGAAAGAGAAAGGCCTAGACCCCGTATATGGGGTGGGGAGGAGTATGACTCGGATCGCGAAGATG ACAGCAAGCCTCATACTAGAAGTTTGAATATGGAGGATGAGTCTGTGCAGAATGATGAAACGAGGGATGACACCGATGATATGGAAGATGATGACAAACC AGAAGTGGATAGTCGATTTTGA
AA sequence Show only first row Show all	>Lus10019486 pacid=23181577 polypeptide=Lus10019486 locus=Lus10019486.g ID=Lus10019486.BGIv1.0 annot-version=v1.0 MEDSTSGASLPSVGTDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFPAGPNDIRKFHSDEYVDFLSTITPSAVSDPLN HRHLKRFNVGEDCPVFDGIFGFCQASTGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILEMLKVHKRVLYVDIDVHHGDGVEEAF YTTDRVMTVSFHKFGDFFPGTGHIRDVGAGQGKSYALNIPLNDGMDDESFKSLFQPIMIKVMEVYQPDAVVLQCGADSLTGDRLGCFNLSVKGHAECLRF LRSFNVPMMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPSNIENLNTPKDIEKIRNILLEQLSRLPNSPSVPFQMTPSV TEVPEEDEEEMDERERPRPRIWGGEEYDSDREDDSKPHTRSLNMEDESVQNDETRDDTDDMEDDDKPEVDSRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63110		RPD3B, CAT1, AX...	RNA-MEDIATED TRANSCRIPTIONAL S...		Lus10019486 [exp]	0	1
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10019778 [exp]	9.1	0.8973
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10001147 [exp]	10.2	0.8871
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10011182 [exp]	10.4	0.8884
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Lus10004715 [exp]	13.1	0.8758
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10019482 [exp]	13.3	0.8938
AT5G05240			Uncharacterised conserved prot...		Lus10034236 [exp]	14.1	0.8812
AT1G55930			CBS domain-containing protein ...		Lus10003111 [exp]	16.0	0.8837
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10007989 [exp]	17.2	0.8621
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10023360 [exp]	19.7	0.8830
AT5G42950			GYF domain-containing protein ...		Lus10012078 [exp]	21.2	0.8779

Compare expression of checked genes

Lus10019486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.