Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50160 560 / 0 ATFRO8, FRO8 ferric reduction oxidase 8 (.1) AT1G01580 286 / 7e-86 FRD1, ATFRO2, FRO2 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) AT1G23020 273 / 7e-81 ATFRO3, FRO3 ferric reduction oxidase 3 (.1.2) AT1G01590 262 / 5e-77 ATFRO1, FRO1 ferric reduction oxidase 1 (.1) AT5G23980 258 / 1e-75 FRO2, ATFRO4, FRO4 ferric reduction oxidase 4 (.1) AT5G23990 226 / 3e-64 ATFRO5, FRO5 ferric reduction oxidase 5 (.1) AT5G49740 223 / 2e-62 ATFRO7, FRO7 ferric reduction oxidase 7 (.1) AT5G49730 218 / 8e-61 ATFRO6, FRO6 ferric reduction oxidase 6 (.1) AT1G09090 78 / 1e-14 ATRBOHB-BETA, ATRBOHB respiratory burst oxidase homolog B (.1.2) AT1G19230 77 / 4e-14 Riboflavin synthase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039268 [exp] 261 / 1e-76 AT1G01580 722 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10036381 [exp] 249 / 9e-72 AT1G01580 701 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10014957 [exp] 234 / 5e-67 AT5G23980 665 / 0.0 ferric reduction oxidase 4 (.1) Lus10043339 [exp] 231 / 7e-67 AT3G48190 321 / 5e-96 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10036379 [exp] 230 / 4e-65 AT1G01580 691 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10007586 [exp] 210 / 7e-58 AT5G49740 867 / 0.0 ferric reduction oxidase 7 (.1) Lus10012161 [exp] 189 / 9e-52 AT5G49740 723 / 0.0 ferric reduction oxidase 7 (.1) Lus10017850 [exp] 79 / 6e-15 AT1G64060 681 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10017527 [exp] 75 / 2e-13 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G083200 [exp] 726 / 0 AT5G50160 650 / 0.0 ferric reduction oxidase 8 (.1) Potri.012G084800 [exp] 705 / 0 AT5G50160 657 / 0.0 ferric reduction oxidase 8 (.1) Potri.014G088000 [exp] 270 / 5e-80 AT1G01580 762 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.017G142800 [exp] 269 / 1e-79 AT5G23980 894 / 0.0 ferric reduction oxidase 4 (.1) Potri.004G079200 [exp] 254 / 3e-74 AT5G23980 870 / 0.0 ferric reduction oxidase 4 (.1) Potri.004G079100 [exp] 234 / 1e-66 AT1G01580 692 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.001G079000 [exp] 225 / 2e-63 AT5G49730 886 / 0.0 ferric reduction oxidase 6 (.1) Potri.017G142700 [exp] 223 / 8e-63 AT1G01580 677 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.003G133300 [exp] 76 / 8e-14 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.012G111600 [exp] 72 / 1e-12 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10019488 pacid=23181613 polypeptide=Lus10019488 locus=Lus10019488.g ID=Lus10019488.BGIv1.0 annot-version=v1.0 ATGGCGAAGAGAGCTATTGTGCTTAGAGCTCTGCAAGTGCTTATGATCTTAATATCTGCTGCATGGGTTGCCATATGGGTTCTGAAGCCAACCAGATACT GGACCAAAACTTGGAAAGTTGCTGAAGATCGTTGGAGGCTCCTGCTACTTGGATATTATGGGCTCAACTTCCTGGTTTACACATTTCCTGTCATTGCTAT AGCTTCCATTGGACTTGTGTACTTGAATTTCCTCCCCAAGCTACCGGCAAAACCAAGAGATGGAGGAAGTTGGACAATGGGATTCAGAAATCCTGCCATA ATAAGCAGCTTCATTGGGATTCTATATTGTGCTGAGATTCTGGCAGTGTTTCTGTTTATTCTCTTCTTGACTTGGACCTTCTATGTCCGAATCTCCAATG ACTTCAAGAAGTTGATGCCAGTGAAGTCTTTAAGCTTGACCTTATGGCAACTGAAGTACCTAAGAGTGGCGACCCGATTCGGGTTGCTAGCAGAAGCATG CCTAGCACTGCTTCTGCTGCCTGTTCTGAGAGGGTTCGCCTTGTTTCGGTTGATCGGAATCCAGTTTGAGGCTTCAGTAAGGTATCACATCTGGCTTGGA ACTGGAATGGTACTCTTTGCCACTGTACATGGAGTAAGCACCTTGTTCATCTGGGGTGTCAGCCGCCATGTTCAACAAGAGATGTGGAGATGGCAAAAGA CTGGAAGGGTATACTTGGCAGGGGAGATAGCACTTGTTGCAGCACTAGTGATGTGGATCACATCACTTCCACAAATAAGGAGGAGAAGATTTGAAATCTT CTACTACACTCACCATCTCTACGTTGTGTTCTTCGTGTTCTTCCTGTTTCATGCTGGGGATAGGCATTTCTATGCTGTTTTGCCAGGTGTATTCCTCTTT GGCCTTGACAAGTTGCTCCGGGTTGTGCAGTCGAGGCCGGGAACTTGCATCCTCTCGGCACGCTTGTTCCCTAGCAGAGCCATAGAGCTCATCCTGCCTA AAGATCCCAGCTTGGAATATTCACCTACAAGCATTGTATACATAAAGATACCAAGCATATCTAGGCTCCATTGGCATTGCTTCAGCTTAACTTCTAGCTC TACCGTTGACAGTCACACCATGTCCGTAATAATAAAATGTGAAGGGGAATGGACTAGTTCTTTGTATGACATGGTACATTCACATCTCGATTCTGAAGCC GATCAGATGAACAGCACCATTCCGATCATGATCGAAGGTCCTTATGGACCCGCCTTGCCAGAATTCTTAAGGTATGAGAGACTGATTCTAGTAGCTGGTG GAATTGGGATCACCCCATTTCTCAGCATTTTGAAGGAACTTGCTTCATCATCATCATCCAAGTTGTTTCCAATGCAAGTAGAGCTCGTATTCGTCACCAG GAAAGCCGGAGATATGAGCCTACTGAGCTCAATCTCTTCACTCCTCTTCCATCCAGCAGGAGAGCAGATGATGAATCTGAAACTGAAAGCATTCGTGACA CAAGAGAATAACAATGATTATAATTATGCAACGGTGAAAGCACTTGTCAGCGACTCAAGAAGGGTCAACTTCAGCAGCAGCAATGAAAAAGGTTCCGTAC ACGCAGCAGCTCAAGGGCTGGAAAGTGGAGTGTGGATGGCTGCGATGCTGGCGTTTGCATCGAAGCTGTTTATGCTTCTGCTCATCTGTTTGAACCATGC ATTCGCTGCAACTCTTCCAGCTGGGAAGAAGAAAAAGGATGAAATGAAGAGCAAGAAGATGGAAATTGGGAAGAAAGGTTTTAGTTCAGTAGAAGGTGAC AAGAGTACTACTCCGTCGACGATCATTGACATGATTCTGTTGACTTGTTTAGTGATTTCGTTGACATTGACGTGTTTGGTTGGGTTCATTGTGAGATGGA GGAGGGTTAAGAAAAGAGAGGCTGTGGGTTTATATGACAGTAAGAACATTGATGAGAAACAAAGGCAGGCTGCCTTTGAAGAAGGAAGAGGATATGATCA TGGTGATACTGTTGAGGAACATGAGGTCCATTTCGGGAGGAGGCCTAACCTGCAAGAGGTGGTGAGAAGGTGGGCGAAGGAAGGAGGAGGCAGTGAAATA AGAGGGGTGGTAGTTTGCGGCCCTGAATCCATGAAAGCGTCAGTGGCGTCAGTTTGTAGTGTGAATGCTCAAGGTTTTGAAACGGAGAAGAAACCATTCC TGTGTTTCCACTCACTTAACTTCACACTCTAG
AA sequence Show only first row Show all	>Lus10019488 pacid=23181613 polypeptide=Lus10019488 locus=Lus10019488.g ID=Lus10019488.BGIv1.0 annot-version=v1.0 MAKRAIVLRALQVLMILISAAWVAIWVLKPTRYWTKTWKVAEDRWRLLLLGYYGLNFLVYTFPVIAIASIGLVYLNFLPKLPAKPRDGGSWTMGFRNPAI ISSFIGILYCAEILAVFLFILFLTWTFYVRISNDFKKLMPVKSLSLTLWQLKYLRVATRFGLLAEACLALLLLPVLRGFALFRLIGIQFEASVRYHIWLG TGMVLFATVHGVSTLFIWGVSRHVQQEMWRWQKTGRVYLAGEIALVAALVMWITSLPQIRRRRFEIFYYTHHLYVVFFVFFLFHAGDRHFYAVLPGVFLF GLDKLLRVVQSRPGTCILSARLFPSRAIELILPKDPSLEYSPTSIVYIKIPSISRLHWHCFSLTSSSTVDSHTMSVIIKCEGEWTSSLYDMVHSHLDSEA DQMNSTIPIMIEGPYGPALPEFLRYERLILVAGGIGITPFLSILKELASSSSSKLFPMQVELVFVTRKAGDMSLLSSISSLLFHPAGEQMMNLKLKAFVT QENNNDYNYATVKALVSDSRRVNFSSSNEKGSVHAAAQGLESGVWMAAMLAFASKLFMLLLICLNHAFAATLPAGKKKKDEMKSKKMEIGKKGFSSVEGD KSTTPSTIIDMILLTCLVISLTLTCLVGFIVRWRRVKKREAVGLYDSKNIDEKQRQAAFEEGRGYDHGDTVEEHEVHFGRRPNLQEVVRRWAKEGGGSEI RGVVVCGPESMKASVASVCSVNAQGFETEKKPFLCFHSLNFTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50160		ATFRO8, FRO8	ferric reduction oxidase 8 (.1...		Lus10019488 [exp]	0	1
AT5G43350		PHT1;1, ATPT1	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10021191 [exp]	3.9	0.8915
AT4G25670			unknown protein		Lus10014961 [exp]	4.9	0.9036
AT2G46690			SAUR-like auxin-responsive pro...		Lus10010110 [exp]	10.5	0.8926
AT4G23720			Protein of unknown function (D...		Lus10028743 [exp]	10.6	0.8063
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10016616 [exp]	11.5	0.8810
AT1G08170			Histone superfamily protein (....		Lus10041351 [exp]	15.0	0.8828
AT4G28290			unknown protein		Lus10033693 [exp]	15.0	0.8359
AT1G10470		IBC7, ATRR1, AR...	maternal effect embryo arrest ...		Lus10010723 [exp]	15.3	0.8352
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10007640 [exp]	16.5	0.8784
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Lus10009427 [exp]	20.1	0.8586

Compare expression of checked genes

Lus10019488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.