Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48240 149 / 7e-46 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G63130 130 / 4e-38 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G26510 126 / 1e-36 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT1G70640 118 / 1e-33 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (.1) AT4G05150 95 / 8e-23 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G46920 92 / 9e-22 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G24715 91 / 3e-21 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49920 89 / 4e-21 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G57610 90 / 6e-21 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 89 / 1e-20 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043341 [exp] 346 / 4e-123 AT3G48240 145 / 2e-44 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10002938 [exp] 128 / 3e-37 AT3G48240 130 / 1e-38 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10026700 [exp] 123 / 2e-35 AT3G26510 135 / 3e-40 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Lus10017947 [exp] 110 / 4e-31 AT5G63130 121 / 1e-35 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10036862 [exp] 108 / 2e-29 AT3G26510 122 / 3e-35 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Lus10006214 [exp] 107 / 5e-29 AT3G26510 123 / 1e-35 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Lus10002588 [exp] 101 / 3e-25 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 96 / 2e-24 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 94 / 2e-22 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G085000 [exp] 160 / 2e-50 AT5G63130 139 / 4e-42 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.015G083400 [exp] 159 / 2e-49 AT3G48240 152 / 2e-47 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G186500 [exp] 137 / 1e-40 AT3G26510 152 / 1e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.010G046400 [exp] 129 / 4e-37 AT3G26510 152 / 5e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.004G032200 [exp] 102 / 9e-26 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 100 / 9e-25 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.003G006200 [exp] 96 / 5e-24 AT5G49920 188 / 3e-58 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G224500 [exp] 97 / 7e-24 AT5G49920 185 / 3e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.006G190200 [exp] 96 / 4e-23 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 95 / 1e-22 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10019490 pacid=23181515 polypeptide=Lus10019490 locus=Lus10019490.g ID=Lus10019490.BGIv1.0 annot-version=v1.0 ATGGTGTGCGATAGTGAGCCGGAGATGAAAACTACTCCCGCCGCAGCGTCGACAAAGACTATTATCAAGTTCCTATGTAGCTACGGAGGGAAGATCGTTC CTCGTTCCAGCGACGGCAAGCTTCGTTACCGCGGCGGACTCACACGAGTGTTTGCAGTCCGTCGTTCCGTTTCTTTTTCCGAGCTGACGTTCAAGCTGGG GGAGTTCTGTGGTGGTCAGTCGTCCGTCGAATTGAAGTGTCAGCTGCCTAACGGAGATTTGGAGACTTTGATCTCGATCAAGTCCGACGAGGAATTAGCC AACCTTTTCGAAGAATATGACCGTTGTTGTCCCGGATCCAAAATCAGAGCGGTCCTGTCCTTGCCCATGTTCAAAACGGTGTCGTCGTCTCCTCTTCCGT CGGAGACAGCAACAAGCAATGATTCCTCTCCTACCACTCCTGAATATTTCCGCCCATCGGCTTGCGGCTTTCACTCCCCGACGTTCGGTTACCGGGCCGG CTTCTATGGAGCTTCCGGCAAAGGCGGCCTCTACAGCCCGCAGCATCCGATCGGAATTGGACAGCAGCGGAAAGTGGTCGGCCGTTGCTACAGGATTTGG AACTAA
AA sequence Show only first row Show all	>Lus10019490 pacid=23181515 polypeptide=Lus10019490 locus=Lus10019490.g ID=Lus10019490.BGIv1.0 annot-version=v1.0 MVCDSEPEMKTTPAAASTKTIIKFLCSYGGKIVPRSSDGKLRYRGGLTRVFAVRRSVSFSELTFKLGEFCGGQSSVELKCQLPNGDLETLISIKSDEELA NLFEEYDRCCPGSKIRAVLSLPMFKTVSSSPLPSETATSNDSSPTTPEYFRPSACGFHSPTFGYRAGFYGASGKGGLYSPQHPIGIGQQRKVVGRCYRIW N

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10019490 [exp]	0	1
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001418 [exp]	2.6	0.8452
					Lus10002111 [exp]	3.5	0.8446
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021648 [exp]	4.5	0.8343
AT1G20920			P-loop containing nucleoside t...		Lus10025525 [exp]	8.0	0.8003
AT4G14450		ATBET12	unknown protein		Lus10021208 [exp]	8.9	0.8320
AT3G58970		MRS2-4, MGT6	magnesium transporter 6 (.1)		Lus10001373 [exp]	9.8	0.7889
AT2G27950			Ring/U-Box superfamily protein...		Lus10016162 [exp]	11.5	0.7935
AT3G12350			F-box family protein (.1.2)		Lus10010607 [exp]	12.4	0.7904
AT3G09032			unknown protein		Lus10027777 [exp]	13.7	0.8081
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023213 [exp]	14.0	0.8346

Compare expression of checked genes

Lus10019490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.