Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52450 412 / 1e-140 MATE efflux family protein (.1) AT1G73700 405 / 1e-137 MATE efflux family protein (.1) AT2G34360 404 / 2e-137 MATE efflux family protein (.1) AT1G71140 335 / 5e-110 MATE efflux family protein (.1) AT1G15150 322 / 5e-105 MATE efflux family protein (.1) AT2G04080 318 / 8e-104 MATE efflux family protein (.1) AT1G66760 315 / 1e-102 MATE efflux family protein (.1.2) AT2G04050 314 / 3e-102 MATE efflux family protein (.1) AT2G04040 311 / 6e-101 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT2G04100 310 / 2e-100 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041994 [exp] 425 / 4e-145 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10017949 [exp] 402 / 3e-136 AT5G52450 402 / 2e-136 MATE efflux family protein (.1) Lus10019470 [exp] 399 / 3e-135 AT5G52450 378 / 5e-127 MATE efflux family protein (.1) Lus10017998 [exp] 374 / 5e-125 AT5G52450 556 / 0.0 MATE efflux family protein (.1) Lus10001318 [exp] 369 / 4e-123 AT5G52450 507 / 1e-177 MATE efflux family protein (.1) Lus10029668 [exp] 345 / 6e-115 AT5G52450 490 / 6e-172 MATE efflux family protein (.1) Lus10009132 [exp] 330 / 5e-108 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10042732 [exp] 322 / 6e-105 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10000619 [exp] 323 / 8e-105 AT1G71140 528 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G051900 [exp] 437 / 4e-150 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.010G116700 [exp] 424 / 5e-145 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.006G170900 [exp] 410 / 1e-139 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.006G171240 [exp] 410 / 2e-139 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.010G116900 [exp] 357 / 6e-119 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 332 / 4e-109 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.017G120500 [exp] 331 / 1e-108 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.010G117000 [exp] 316 / 1e-102 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.004G094700 [exp] 315 / 2e-102 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.008G126500 [exp] 313 / 1e-101 AT1G15170 546 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10019492 pacid=23181467 polypeptide=Lus10019492 locus=Lus10019492.g ID=Lus10019492.BGIv1.0 annot-version=v1.0 ATGATCAAAAGCAATGAGGAGCTAGAGAGCTGCGATCCGCTGCTGATCGGAGCTGGTGGTGACGATGAAGAAACAGAGGAGGAGGAGGAGGAGGTGGTCG GACGGGGGTGGGTGAGAGAGCTGAAGAAGCAAATGAGGGTAGCTGGGCCGATGGTGGTAGTGAGTTTCTTGCAGTATAGCTTGCAGTTGATATCGGTGAT GTTCGTCGGCCGTCTGGGACAGCTCCCACTCGCCTCCGCCTCCTTGGCTACTTCCTTCGCCGGAGTCACCGGCTTTAGCTTCATGATGGGAATGGGAGGC GCAGTGGAGACATTCTGCGGCCAAGCCTACGGAGCAAAGCAACACAAACTGCTGGGACTCCATCTCCAAAGATCCATGGCAGTCGTTTCACTCCTCACAA TCCCAATCTCAATCCTCTGGGCATTCTCCACACAAATGTTCCTACTCTTACGCCAAGACCCACGCATCTCCCGCGGCGCAGGCACCTACTCACTGTTCCT GATACCCAGCATCCTCCCTTACGGACTGTTACAGTGCCAGCTCAGGTTCTTGCAGACCCAGAACTTGGTCTCCCCCTTGTTGCTCGCAACTTCGCTCACC ACTCTGCTTCACTTCCTGCTCTGCTGGGCTCTCATCTTTCGGTTCGGGTTTGGGAACGAGGGAGCTGCTTTGTCGGTCGCTGTGTCCTATTGGTTTAACG TCGTCGTTTTGGACGTCTACATCCGGTTTTCGGGAGCTTGCCAGGAGACTTGGACCGGGTTTTGCATGGATGGGGTGAAGGATCTTGGTGGGTTTCTCAA GCTTGGTGTCCCTTCTGCTCTCATGGTTTGCCTGGAGTTTTGGTCGTATGAGTTTCTGGTGTTCATGTCGGGACTTCTCCCCAATCCCCAGCTTGAAACT TCCATGATGTCTCTCAGCATTAGCACGAGCTCTGTAGCGTTCAGGATTCCCTACGGACTTGGCAGTGCAGTCAGCACGAGGGTAGCAAACGAACTGGGGG CAGGGAGACCGAAAGCGGCGGTATTAGCCGTAAAAGTGGGGACATATCTGTCAATAGCACAAGGACTGTCTCTGAGCTTGATTCTAGTGTTGATACGACA CGTGTGGGGGTTCGTGTACACCAACGATGTAGAGCTCGCCGCGTATATCGCCGCCGTCATTCCTGTCTTGGCCGTCTCCAACTTCATGGACGCACTTCAA GCTGTTTTCTCAGGTGTTGCAAGAGGCTGCGGGTGGCAGCTCATGGGAAGTTTTGTCAACTTGGGAGCTTACTATCTGGCCGGCCTCCCTGCCGCAATGC TTTTGACCTTCGTTTTCCACTTCGGAGGAATGGGTCTATGGATGGGAATCATTTGCGGGAGTAGCATACAAGCTTGTGTTCTATTTGGCATTACCCAGAC CACTAACTGGCAACTAGAAGCGACGGATACTTCTGTCGCTGCGACCATGCTTGCTTAA
AA sequence Show only first row Show all	>Lus10019492 pacid=23181467 polypeptide=Lus10019492 locus=Lus10019492.g ID=Lus10019492.BGIv1.0 annot-version=v1.0 MIKSNEELESCDPLLIGAGGDDEETEEEEEEVVGRGWVRELKKQMRVAGPMVVVSFLQYSLQLISVMFVGRLGQLPLASASLATSFAGVTGFSFMMGMGG AVETFCGQAYGAKQHKLLGLHLQRSMAVVSLLTIPISILWAFSTQMFLLLRQDPRISRGAGTYSLFLIPSILPYGLLQCQLRFLQTQNLVSPLLLATSLT TLLHFLLCWALIFRFGFGNEGAALSVAVSYWFNVVVLDVYIRFSGACQETWTGFCMDGVKDLGGFLKLGVPSALMVCLEFWSYEFLVFMSGLLPNPQLET SMMSLSISTSSVAFRIPYGLGSAVSTRVANELGAGRPKAAVLAVKVGTYLSIAQGLSLSLILVLIRHVWGFVYTNDVELAAYIAAVIPVLAVSNFMDALQ AVFSGVARGCGWQLMGSFVNLGAYYLAGLPAAMLLTFVFHFGGMGLWMGIICGSSIQACVLFGITQTTNWQLEATDTSVAATMLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52450			MATE efflux family protein (.1...		Lus10019492 [exp]	0	1
AT3G11810			unknown protein		Lus10030427 [exp]	6.1	0.8065
AT4G27595			Plant protein of unknown funct...		Lus10042237 [exp]	17.7	0.7556
AT3G05390			unknown protein		Lus10004494 [exp]	23.6	0.8024
AT2G25830			YebC-related (.1)		Lus10011628 [exp]	24.9	0.7501
AT5G20260			Exostosin family protein (.1)		Lus10005186 [exp]	32.3	0.7803
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004178 [exp]	32.3	0.7277
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10007100 [exp]	36.4	0.7633
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029183 [exp]	41.3	0.7326
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021049 [exp]	47.2	0.7656
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026236 [exp]	51.4	0.6977

Compare expression of checked genes

Lus10019492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.