Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47060 87 / 1e-22 Protein of unknown function (DUF581) (.1) AT4G17670 83 / 3e-21 Protein of unknown function (DUF581) (.1) AT2G44670 74 / 2e-18 Protein of unknown function (DUF581) (.1) AT1G53903 61 / 3e-13 Protein of unknown function (DUF581) (.1) AT1G53885 61 / 3e-13 Protein of unknown function (DUF581) (.1) AT1G78020 60 / 3e-12 Protein of unknown function (DUF581) (.1) AT1G22160 58 / 1e-11 Protein of unknown function (DUF581) (.1) AT5G65040 57 / 1e-11 Protein of unknown function (DUF581) (.1) AT5G49120 52 / 2e-09 Protein of unknown function (DUF581) (.1) AT4G39795 49 / 1e-08 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043343 [exp] 85 / 5e-23 AT5G47060 61 / 4e-13 Protein of unknown function (DUF581) (.1) Lus10019672 [exp] 64 / 1e-13 AT1G78020 100 / 2e-27 Protein of unknown function (DUF581) (.1) Lus10000693 [exp] 64 / 1e-13 AT1G78020 99 / 6e-27 Protein of unknown function (DUF581) (.1) Lus10022073 [exp] 52 / 2e-09 AT3G63210 59 / 5e-11 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) Lus10010568 [exp] 52 / 6e-09 AT3G22550 187 / 2e-58 Protein of unknown function (DUF581) (.1) Lus10006499 [exp] 51 / 7e-09 AT5G49120 79 / 2e-19 Protein of unknown function (DUF581) (.1) Lus10037493 [exp] 50 / 1e-08 AT5G49120 83 / 1e-20 Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 51 / 2e-08 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10006102 [exp] 50 / 2e-08 AT3G22550 193 / 1e-60 Protein of unknown function (DUF581) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G140300 [exp] 95 / 9e-27 AT2G44670 85 / 3e-23 Protein of unknown function (DUF581) (.1) Potri.014G052900 [exp] 94 / 2e-26 AT2G44670 88 / 2e-24 Protein of unknown function (DUF581) (.1) Potri.001G148700 [exp] 87 / 8e-23 AT4G17670 142 / 5e-44 Protein of unknown function (DUF581) (.1) Potri.003G085700 [exp] 86 / 2e-22 AT4G17670 140 / 2e-43 Protein of unknown function (DUF581) (.1) Potri.005G168900 [exp] 61 / 7e-13 AT1G22160 142 / 2e-44 Protein of unknown function (DUF581) (.1) Potri.002G092900 [exp] 61 / 9e-13 AT1G22160 137 / 5e-42 Protein of unknown function (DUF581) (.1) Potri.003G071900 [exp] 59 / 4e-12 AT1G53903 108 / 4e-31 Protein of unknown function (DUF581) (.1) Potri.001G163400 [exp] 59 / 8e-12 AT1G53903 113 / 5e-33 Protein of unknown function (DUF581) (.1) Potri.005G078600 [exp] 58 / 2e-11 AT1G78020 106 / 3e-29 Protein of unknown function (DUF581) (.1) Potri.007G089200 [exp] 56 / 1e-10 AT1G78020 120 / 8e-35 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF04570 [flax] [poplar] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Lus10019494 pacid=23181486 polypeptide=Lus10019494 locus=Lus10019494.g ID=Lus10019494.BGIv1.0 annot-version=v1.0 ATGTATCCCGGCTACTCTTACGGATCTGGCGAAAAGTTGGACCGCCACTTGCAGCCTCACTTCCTTGATGCATGTTTCCTCTGCCACAAACCTCTCCCTT CCAACTCCGACATCTTCATGTACAGAGGGAATACTCCTTTCTGTAGCAAAGAGTGCAGGCAGGAGCAAATTGAGATTGACGAATCCAGCGAGATGATGGC CGCGACGGCCTGGAAGAAGAAGAAGAAGAAGTTTCTTCTTCCAGCTTCTTCCTCTGCTAATAGTACTACTAGATCGGCGGTGACTTCTCCTTCTTCTACT TCCACCAAAGCTGTACGGACTGGCACGGTTTCCGTTGCTTAA
AA sequence Show only first row Show all	>Lus10019494 pacid=23181486 polypeptide=Lus10019494 locus=Lus10019494.g ID=Lus10019494.BGIv1.0 annot-version=v1.0 MYPGYSYGSGEKLDRHLQPHFLDACFLCHKPLPSNSDIFMYRGNTPFCSKECRQEQIEIDESSEMMAATAWKKKKKKFLLPASSSANSTTRSAVTSPSST STKAVRTGTVSVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47060			Protein of unknown function (D...		Lus10019494 [exp]	0	1
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10038976 [exp]	1.4	0.9015
AT1G13750			Purple acid phosphatases super...		Lus10036904 [exp]	2.2	0.8829
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10003077 [exp]	2.4	0.8934
AT2G42760			unknown protein		Lus10005429 [exp]	3.5	0.9029
AT2G41150			unknown protein		Lus10022403 [exp]	3.7	0.8706
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10024172 [exp]	4.0	0.8884
AT2G21870		MGP1	MALE GAMETOPHYTE DEFECTIVE 1, ...		Lus10005794 [exp]	8.9	0.8618
AT3G25220		FKBP15-1	FK506-binding protein 15 kD-1 ...		Lus10002339 [exp]	9.6	0.8421
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10035934 [exp]	9.8	0.8631
					Lus10017966 [exp]	11.2	0.8741

Compare expression of checked genes

Lus10019494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.