Plant FIBer expression Database

Lus10019495 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44660 666 / 0 ALG6, ALG8 glycosyltransferase family (.1)
AT5G38460 101 / 1e-22 ALG6, ALG8 glycosyltransferase family (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043344
[exp]
935 / 0 AT2G44660 725 / 0.0 ALG6, ALG8 glycosyltransferase family (.1)
Lus10017594
[exp]
103 / 2e-23 AT5G38460 682 / 0.0 ALG6, ALG8 glycosyltransferase family (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G053200
[exp]
697 / 0 AT2G44660 669 / 0.0 ALG6, ALG8 glycosyltransferase family (.1)
Potri.017G114100
[exp]
93 / 8e-20 AT5G38460 595 / 0.0 ALG6, ALG8 glycosyltransferase family (.1.2)
Potri.004G100500
[exp]
92 / 1e-19 AT5G38460 568 / 0.0 ALG6, ALG8 glycosyltransferase family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0111 GT-C PF03155 Alg6_Alg8 ALG6, ALG8 glycosyltransferase family
Representative CDS sequence
>Lus10019495 pacid=23181583 polypeptide=Lus10019495 locus=Lus10019495.g ID=Lus10019495.BGIv1.0 annot-version=v1.0
ATGGCAGCTGGAAAATCTCAGTTGGAAAGGGAGCCGATCATACGGCGAATAAATCTCGTATGGTTCTTCGGTGTAGCAGCTTGCGTTAAACTCCTCCTGA
TCCCGTCATACCACAGTACTGACTTTGAAGTCCACCGTCACTGGTTGGCTTTGACCCGATCCCTTCCCATCTCTCAATGGTACTCTGATGAAACCAGCCC
TTGGACGCTGGATTATCCGCCTTTCTTCGCCTACTTTGAGTACATTCTCTCCTTCTTTGCTCGCCTCGTCGACCCTCAGATCGTCGACATTAACAAGGGC
ATCAACTATAAAGCCAACACCGTCGTCTATTTCCAAAGAATTACGGTAATCTTATCCGATCTGTGCCTTTTAGACGGGGTATACCGATTGACCAGGAAGT
TGGAGGGTAAATCTAAGGTTTTGATGTGGACATTGGTGGTCTGGTCTCCAGCGCTTGTGATTGTCGACCATATACATTTTCAGTACAACGGGTTTTTGCT
TGGGCTGTTGATGCTGTCCATCTCCTATTTGCAAGATGGGAGCGATTTGATGGGGGGATTTCTCTTCGCAGTGTTGCTGTGTTTTAAGCACCTGTTTGCG
GTGGCTGGACCTGTTTATTTTGTTTACTTGTTGAGACATTATTGCCGCGGTGGATTGCTCAAGGGTGTTGGAAGGCTCTCCATCATGGGAGCTGTTGTGG
TGTCTGTTTTTGCAGCTGCATTTGCTCCCTTTTTCTACCAGGGCCAGATTCAACAAGTGATCAGCCGAATGTTTCCTTTTGGCAGGGGACTTTGTCACGC
ATACTGGGCTCCGAATTTTTGGGTCTTCTACATTATATTAGATAAAGGCCTTGGTTTTCTGCTTAGAAGACTTGGGTTGGAAGTTCCAACACCGGCAGCT
TCATTCACGGGCGGGTTAGTTGGGGATTCATCTCCTTTTGCAGTATTACCACAGGTGACTCCCCTGACAACTTTCACCATGGTGCTACTGGCTATGTCTC
CTTGCCTTGTTAAGATATGGAAGAATCCTCAGCCAGGGTCAGTTGCCAGATGGATATCCTATGCTTATACCTGCGGGTTTCTATTCGGATGGCATGTACA
TGAGAAGGCATCACTCCATTTTGTCATACCTCTTGCTATTGTTGCAAACCAGAGCCTGGAGGATGCTAAGCATTACTTCTTGCTTTCAATCGCAACGTGT
TACTCGTTATTTCCACTTCTATATGAGGCCCAGGAATATCCTATCAAAGCTGTGTTATTACTGCTACATTGCATACTGATGTGGTTCTGCTTCAGTGCCA
AATTCGGCAAGGCCAATGCAGCTAAGAACTCAGCCATCTCAGATAAGGATTCCAGCACTAGCCAGAAAAAAGAAGAGGAAGAACGAGAATTCGAGATCGG
ACTAGGGGTGAAGTGTTATATTGTGGGTATAGTGGCTGTGGAGACATGGGGACAGCTGTTGCATCCGTACTTTCTGGGTGAAAAGCTTCCATTCATACCA
CTTCTGTCCATCTCCATCTATTGTGGGATTGTGGTAATGTACTCTTGGATGTGGCAGCTTAAACGGATAATGGTGTGA
AA sequence
>Lus10019495 pacid=23181583 polypeptide=Lus10019495 locus=Lus10019495.g ID=Lus10019495.BGIv1.0 annot-version=v1.0
MAAGKSQLEREPIIRRINLVWFFGVAACVKLLLIPSYHSTDFEVHRHWLALTRSLPISQWYSDETSPWTLDYPPFFAYFEYILSFFARLVDPQIVDINKG
INYKANTVVYFQRITVILSDLCLLDGVYRLTRKLEGKSKVLMWTLVVWSPALVIVDHIHFQYNGFLLGLLMLSISYLQDGSDLMGGFLFAVLLCFKHLFA
VAGPVYFVYLLRHYCRGGLLKGVGRLSIMGAVVVSVFAAAFAPFFYQGQIQQVISRMFPFGRGLCHAYWAPNFWVFYIILDKGLGFLLRRLGLEVPTPAA
SFTGGLVGDSSPFAVLPQVTPLTTFTMVLLAMSPCLVKIWKNPQPGSVARWISYAYTCGFLFGWHVHEKASLHFVIPLAIVANQSLEDAKHYFLLSIATC
YSLFPLLYEAQEYPIKAVLLLLHCILMWFCFSAKFGKANAAKNSAISDKDSSTSQKKEEEEREFEIGLGVKCYIVGIVAVETWGQLLHPYFLGEKLPFIP
LLSISIYCGIVVMYSWMWQLKRIMV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G44660 ALG6, ALG8 glycosyltransferase... Lus10019495
[exp]
0 1
AT4G19006 Proteasome component (PCI) dom... Lus10012120
[exp]
2.0 0.9396
AT2G26140 FTSH4 FTSH protease 4 (.1) Lus10013521
[exp]
10.4 0.9008
AT5G09900 RPN5A, MSA, EMB... REGULATORY PARTICLE NON-ATPASE... Lus10005804
[exp]
10.5 0.9028
AT2G44660 ALG6, ALG8 glycosyltransferase... Lus10043344
[exp]
11.4 0.9039
AT1G51980 Insulinase (Peptidase family M... Lus10038262
[exp]
13.6 0.9231
AT3G13920 RH4, TIF4A1, EI... eukaryotic translation initiat... Lus10017153
[exp]
13.7 0.9227
AT5G65750 2-oxoglutarate dehydrogenase, ... Lus10015205
[exp]
14.7 0.9100
AT2G20420 ATP citrate lyase (ACL) family... Lus10003620
[exp]
15.2 0.9104
AT2G34590 Transketolase family protein (... Lus10023304
[exp]
21.5 0.9070
AT1G29880 glycyl-tRNA synthetase / glyci... Lus10029203
[exp]
22.6 0.9091

Lus10019495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.