Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44650 172 / 4e-56 CHL-CPN10 chloroplast chaperonin 10 (.1) AT3G60210 170 / 1e-55 GroES-like family protein (.1) AT5G20720 46 / 2e-06 CHCPN10, ATCPN21, CPN21, CPN20 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043345 [exp] 141 / 2e-44 AT2G44650 107 / 6e-31 chloroplast chaperonin 10 (.1) Lus10021244 [exp] 47 / 9e-07 AT5G20720 372 / 1e-131 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Lus10013607 [exp] 47 / 1e-06 AT5G20720 373 / 5e-132 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Lus10016196 [exp] 46 / 3e-06 AT5G20720 315 / 7e-108 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G044300 [exp] 197 / 4e-66 AT3G60210 211 / 1e-71 GroES-like family protein (.1) Potri.002G135700 [exp] 150 / 5e-48 AT3G60210 150 / 4e-48 GroES-like family protein (.1) Potri.006G138600 [exp] 47 / 8e-07 AT5G20720 395 / 1e-140 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Potri.018G063200 [exp] 43 / 2e-05 AT5G20720 383 / 5e-136 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Potri.010G111600 [exp] 40 / 7e-05 AT1G23100 155 / 1e-50 GroES-like family protein (.1) Potri.008G130500 [exp] 39 / 9e-05 AT1G23100 157 / 7e-52 GroES-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF00166 [flax] [poplar] Cpn10 Chaperonin 10 Kd subunit
Representative CDS sequence Show only first row Show all	>Lus10019497 pacid=23181525 polypeptide=Lus10019497 locus=Lus10019497.g ID=Lus10019497.BGIv1.0 annot-version=v1.0 ATGGCGTCCACTGCATTTTCCACAGTCAGGTTACCAGTACCCTCATTGGTGGTCAACCCCAACCATTCCATCTCTCGTGCTCGACCTGCCCTTCTTGGTT CAAGAAGCAATTCTCTTAGAATCCGTGCTGTCTCCAAGCAATGGGAACCTACTAAAGTTGTGCCGCAAGCTGATCGAGTCCTCATCCGTCTCGAAGAGCT CCCCGAGAAATCGGCAGGGGGAATCCTTTTACCTAAGTCAGCTGTTAAGTTCGAGCGATACCTTGTTGGGGAGGTGTTGTCCGTTGGTACAGAGGCTGAG CAGGTTGAGGCCGGCAAGAAGGTTCTTTTATCGGACATCCATGCTTACGAGGTGGATCTAGGAACAGATGGCCGACATTGTTTTGCCAGAGCTAGTGATT TGTTGGCTGTAGTTGAGTGA
AA sequence Show only first row Show all	>Lus10019497 pacid=23181525 polypeptide=Lus10019497 locus=Lus10019497.g ID=Lus10019497.BGIv1.0 annot-version=v1.0 MASTAFSTVRLPVPSLVVNPNHSISRARPALLGSRSNSLRIRAVSKQWEPTKVVPQADRVLIRLEELPEKSAGGILLPKSAVKFERYLVGEVLSVGTEAE QVEAGKKVLLSDIHAYEVDLGTDGRHCFARASDLLAVVE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44650		CHL-CPN10	chloroplast chaperonin 10 (.1)		Lus10019497 [exp]	0	1
AT2G44650		CHL-CPN10	chloroplast chaperonin 10 (.1)		Lus10043345 [exp]	1.0	0.8904
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10024852 [exp]	4.0	0.8408
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Lus10003138 [exp]	5.3	0.8155
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10012156 [exp]	6.0	0.8104
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10021244 [exp]	10.2	0.7744
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10024250 [exp]	12.0	0.8151
AT4G13590			Uncharacterized protein family...		Lus10023685 [exp]	12.2	0.8269
					Lus10035524 [exp]	13.4	0.7992
AT5G14910			Heavy metal transport/detoxifi...		Lus10032167 [exp]	27.9	0.8274
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10039077 [exp]	29.1	0.7137

Compare expression of checked genes

Lus10019497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.