Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44640 450 / 1e-155 unknown protein AT3G06960 216 / 2e-64 TGD4, PDE320 TRIGALACTOSYLDIACYLGLYCEROL 4, pigment defective 320 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043347 [exp] 874 / 0 AT2G44640 447 / 7e-155 unknown protein Lus10022978 [exp] 247 / 3e-76 AT3G06960 530 / 0.0 TRIGALACTOSYLDIACYLGLYCEROL 4, pigment defective 320 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G044200 [exp] 501 / 8e-176 AT2G44640 446 / 3e-154 unknown protein Potri.010G002800 [exp] 256 / 3e-80 AT3G06960 521 / 0.0 TRIGALACTOSYLDIACYLGLYCEROL 4, pigment defective 320 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12600 [flax] [poplar] DUF3769 Protein of unknown function (DUF3769)
Representative CDS sequence Show only first row Show all	>Lus10019499 pacid=23181574 polypeptide=Lus10019499 locus=Lus10019499.g ID=Lus10019499.BGIv1.0 annot-version=v1.0 ATGGCGAATCTCCGGACGGCAATGGATTCAGCATTCTGGGACCAGCCAGTTTCCTCTCCGAAAACCCTAGATGGCTGCGTCCGGTCAGTACCAAGCCAAG CATTCCCTCTGGAAATCTCTAGAGCTAGCCGAGCCCTCCGCATTCAACAGCTCTCCATCCTCAGTCGTGTTTTCCCTCTCGGAATTATCCCTTCCATTTC CCCGACTCCCCACGACCCCCAACTCGGCTCCCTCGCTTTCCAGTCCTCCTTCCTCAAGCTCTCCCTCTCCAATTGGTGGCTTGGACTTGTTGGCCAATTC CGCCCCAATAAACTCATTTCATCCATCAAGCGAGATTGCTTCAATGGAAGCTCCCCTGAATTCAAGAATGTAGGGAAGCATGTGTTGGACGAATCACTCT ACTCAATAGGTGCTTATACTCAATTCTCCCCAATTCCATCCACCTCCCTCTTGCTCTCTACTGAGCGCCATGGCGACAAGAAGACACCTCGTCACAAACT CATGCTCTACCACCAGCTTCGTAACCACGACATTACTTTAGAGGCAGCAGTGCCTGAGATGTTTGTTGACAACCGTAAAGCTGCGGGATACTGGGATGTT CCTCAGTCAGCATCCTTAGACGTGTCTTCCCTTCTCAACAAATCCGGTTTCGTCTACCGATTTGGCCTCCACGCAAATGCAGGTTATCCTAAAGCTGCTG TTACTACAGTGGATGCCGAGCCACCCTCTGCTTTGGTGCCTGGACTATGTGGCAAGGTTGCCTGTTCTTACCAGAAGAGCAAGGATTTCTGGCGGATAAA GTATTCCAAGAGTGCTGAGATGCGCTTGTCCCTGCCGCGTCCCTATGATGATCAACTAAAGGAACCTCATTCTTCTCTCTCTGGAATCATTGGTGCCACC TGCGCAGCCTGGTTAATTGGCGAGGAACGCTTAGCCAAACCCTTTGCTCCCAGACCACGAAGAAGAAGGAGTAGGAACATTCCAGTTCCAGATCCAATTC CAGCAAAGAGTAGTATACAGAGGAGCCCAGTAAGTGCAGATATGTTCGGCTCAGTTTGCTATACCATCCAACATGGGAAGTTCACTAAGAGCTACGGTGA CTTGACAAGGCTAGATGCTCGCCTGGATATATTTTCAGCAGCAGCTCTCTCAAAAGCGGTTTTCAATACGTCTCAAAATTCAGAAGGCAATCCAGACAAT TCACTATCTTCTCCCAGGCTCAACTTCATCTTCCAACAGCAGGTTGCGGGGCCTGTAGTGGCTCGAGTGGATTCAAGGTTTGCAGTGGGTGGTTCGTCGA GAGGGGCGCACCTGGAAGATGTGGTATACAGTTTGAATTATTCATTGAAGGCAATGAGGGCTGCGAAAGTTGTAGCTTGGTATTCACCCAAAAGAAAAGA GGGAATGGTTGAACTACGCGTCTCTGAGTTCTAG
AA sequence Show only first row Show all	>Lus10019499 pacid=23181574 polypeptide=Lus10019499 locus=Lus10019499.g ID=Lus10019499.BGIv1.0 annot-version=v1.0 MANLRTAMDSAFWDQPVSSPKTLDGCVRSVPSQAFPLEISRASRALRIQQLSILSRVFPLGIIPSISPTPHDPQLGSLAFQSSFLKLSLSNWWLGLVGQF RPNKLISSIKRDCFNGSSPEFKNVGKHVLDESLYSIGAYTQFSPIPSTSLLLSTERHGDKKTPRHKLMLYHQLRNHDITLEAAVPEMFVDNRKAAGYWDV PQSASLDVSSLLNKSGFVYRFGLHANAGYPKAAVTTVDAEPPSALVPGLCGKVACSYQKSKDFWRIKYSKSAEMRLSLPRPYDDQLKEPHSSLSGIIGAT CAAWLIGEERLAKPFAPRPRRRRSRNIPVPDPIPAKSSIQRSPVSADMFGSVCYTIQHGKFTKSYGDLTRLDARLDIFSAAALSKAVFNTSQNSEGNPDN SLSSPRLNFIFQQQVAGPVVARVDSRFAVGGSSRGAHLEDVVYSLNYSLKAMRAAKVVAWYSPKRKEGMVELRVSEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44640			unknown protein		Lus10019499 [exp]	0	1
AT2G44640			unknown protein		Lus10043347 [exp]	1.4	0.9347
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10004934 [exp]	1.7	0.9252
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Lus10037574 [exp]	2.0	0.9286
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10028879 [exp]	6.0	0.9048
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10018284 [exp]	6.6	0.9117
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10025810 [exp]	7.1	0.9064
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041326 [exp]	7.1	0.8972
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031908 [exp]	8.4	0.8719
AT4G02930			GTP binding Elongation factor ...		Lus10008161 [exp]	12.7	0.9011
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10004935 [exp]	13.8	0.8693

Compare expression of checked genes

Lus10019499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.