Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44610 375 / 3e-134 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT5G10260 355 / 1e-126 AtRABH1e RAB GTPase homolog H1E (.1) AT2G22290 343 / 9e-122 ATRAB6, ATRAB-H1D, AtRABH1d ARABIDOPSIS RAB GTPASE HOMOLOG 6, ARABIDOPSIS RAB GTPASE HOMOLOG H1D, RAB GTPase homolog H1D (.1) AT4G39890 317 / 4e-111 AtRABH1c RAB GTPase homolog H1C (.1) AT5G64990 295 / 6e-103 AtRABH1a RAB GTPase homolog H1A (.1.2) AT5G45130 158 / 9e-49 ATRAB-F2A, RHA1, AtRab5A, AtRABF2a ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) AT3G54840 156 / 5e-48 ARA6, AtRABF1, Ara-6, AtRab5C Ras-related small GTP-binding family protein (.1.2) AT4G19640 155 / 1e-47 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT4G17160 143 / 7e-43 AtRab2B, AtRABB1a RAB GTPase homolog B1A (.1) AT3G11730 140 / 1e-41 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043349 [exp] 390 / 3e-140 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10041702 [exp] 359 / 4e-128 AT5G10260 404 / 7e-146 RAB GTPase homolog H1E (.1) Lus10014336 [exp] 358 / 2e-127 AT5G10260 402 / 3e-145 RAB GTPase homolog H1E (.1) Lus10024046 [exp] 360 / 4e-127 AT5G10260 405 / 3e-145 RAB GTPase homolog H1E (.1) Lus10019502 [exp] 201 / 5e-67 AT2G44610 218 / 5e-74 Ras-related small GTP-binding family protein (.1) Lus10028820 [exp] 159 / 3e-49 AT3G54840 354 / 3e-126 Ras-related small GTP-binding family protein (.1.2) Lus10017462 [exp] 159 / 5e-47 AT3G54840 349 / 1e-121 Ras-related small GTP-binding family protein (.1.2) Lus10034903 [exp] 152 / 3e-46 AT5G45130 258 / 2e-88 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10038334 [exp] 150 / 7e-46 AT5G45130 349 / 3e-124 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G135500 [exp] 375 / 3e-134 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1) Potri.003G086700 [exp] 373 / 2e-133 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.005G075300 [exp] 358 / 7e-128 AT5G10260 400 / 2e-144 RAB GTPase homolog H1E (.1) Potri.001G147900 [exp] 276 / 4e-95 AT2G44610 298 / 2e-103 Ras-related small GTP-binding family protein (.1) Potri.012G117800 [exp] 155 / 1e-47 AT5G45130 357 / 1e-127 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.010G226300 [exp] 154 / 2e-47 AT3G54840 373 / 7e-134 Ras-related small GTP-binding family protein (.1.2) Potri.008G035800 [exp] 153 / 6e-47 AT3G54840 367 / 3e-131 Ras-related small GTP-binding family protein (.1.2) Potri.018G079300 [exp] 150 / 6e-46 AT5G45130 273 / 2e-94 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.015G113000 [exp] 150 / 1e-45 AT5G45130 339 / 2e-120 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.003G054900 [exp] 144 / 3e-43 AT4G19640 270 / 4e-93 ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10019501 pacid=23181624 polypeptide=Lus10019501 locus=Lus10019501.g ID=Lus10019501.BGIv1.0 annot-version=v1.0 ATGGCTCCAGTATCCGCTCTGGCGAAGTACAAGCTGGTGTTCTTAGGTGATCAGTCTGTTGGTAAAACCAGTATCATCACCCGCTTCATGTATGATAAGT TCGACAATACTTATCAGGCTACCATTGGTATTGATTTTCTCTCAAAGACTATGTACCTTGAAGACAGAACTGTTAGATTGCAGCTCTGGGACACTGCAGG ACAAGAACGGTTCAGAAGCCTCATTCCAAGTTACATAAGAGATTCATCTGTAGCGGTCATTGTGTATGATGTTGCAAGCAGACATTCGTTTCTGAACACA TCCAAATGGATTGAAGAGGTTCGCACTGAGCGGGGAAGTGATGTCATAATTGTACTGGTCGGAAATAAGACTGATCTTGTTGACAAAAGGCAAGTTTCAG TAGAGGAAGGAGAGGCAAAAGCTCGTGAGATGAATGTCATGTGTATCGAGACAAGTGCAAAGGCTGGCTTCAATATTAAGGCGCTGTTCAGGAAGATTGC AGCAGCACTGCCGGGAATGGAAACACTTTCATCAACGAAGCAAGAAGATATGGTTGATGTGAATCTCAAGTCCTCAAATGCTAATGCATCACAGTCCCAA GGGCAGTCAGGAGGATGTGCTTGTTGA
AA sequence Show only first row Show all	>Lus10019501 pacid=23181624 polypeptide=Lus10019501 locus=Lus10019501.g ID=Lus10019501.BGIv1.0 annot-version=v1.0 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRHSFLNT SKWIEEVRTERGSDVIIVLVGNKTDLVDKRQVSVEEGEAKAREMNVMCIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLKSSNANASQSQ GQSGGCAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10019501 [exp]	0	1
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10043349 [exp]	1.4	0.8477
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10041291 [exp]	2.2	0.8415
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10019502 [exp]	3.5	0.8068
AT2G25070			Protein phosphatase 2C family ...		Lus10026253 [exp]	6.6	0.8427
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020705 [exp]	11.4	0.8134
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10028274 [exp]	12.7	0.8154
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Lus10015693 [exp]	14.6	0.8498
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10004389 [exp]	16.6	0.7566
AT4G14455		ATBS14B ,ATBET1...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10041158 [exp]	16.9	0.7932
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10011545 [exp]	17.3	0.7804

Compare expression of checked genes

Lus10019501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.