Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019504 pacid=23181479 polypeptide=Lus10019504 locus=Lus10019504.g ID=Lus10019504.BGIv1.0 annot-version=v1.0 ATGGCCTCCACTCGCTGCTGCTTCCTCCTCTACAACTTATTGCGCGGTGGTGGGTTTGGTTTGCGGTCAATCTCATTCCTCTGCCTCCAGAGCTGCAGTG AGAAACTCTACCCTTCTTTCCAAATCGATCAAGACAAGATCTCCAGTGCCATCAACCCTCTAAGGAGCAACATCAACGGGTCCTTAGCCTACTATGTCGA GTCTATAACAAGCTCGAAACAAGGGAACCTGCTCGCCGGTGCCGCCGCGGGCTATGGACAGATTTTCGTCTCCGATGAGTCGGCCATGGGAGATGGAAAT AACCCCTCTGTCTTCTCTCCCTTGATAGCCGTCGAGGGCTATGGCTCCCAAAAGCTAAAAGATAGCTTCAGTACCCCACCACTCTTAAAGAAGAAAGCTC CAAAGTGA
AA sequence Show only first row Show all	>Lus10019504 pacid=23181479 polypeptide=Lus10019504 locus=Lus10019504.g ID=Lus10019504.BGIv1.0 annot-version=v1.0 MASTRCCFLLYNLLRGGGFGLRSISFLCLQSCSEKLYPSFQIDQDKISSAINPLRSNINGSLAYYVESITSSKQGNLLAGAAAGYGQIFVSDESAMGDGN NPSVFSPLIAVEGYGSQKLKDSFSTPPLLKKKAPK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019504 [exp]	0	1
AT4G38830		CRK26	cysteine-rich RLK (RECEPTOR-li...		Lus10002371 [exp]	7.1	0.8482
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10013224 [exp]	16.1	0.7780
					Lus10043307 [exp]	17.1	0.8415
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002933 [exp]	23.5	0.8259
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10033282 [exp]	24.6	0.7132
AT1G11340			S-locus lectin protein kinase ...		Lus10013247 [exp]	27.3	0.7123
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10040940 [exp]	27.3	0.6894
					Lus10019410 [exp]	29.2	0.8119
AT5G07380			unknown protein		Lus10043018 [exp]	31.9	0.8051
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	34.3	0.8117

Compare expression of checked genes

Lus10019504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.