Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44600 138 / 1e-38 unknown protein AT3G60200 114 / 1e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043351 [exp] 407 / 8e-144 AT2G44600 159 / 1e-46 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G135400 [exp] 177 / 2e-53 AT2G44600 168 / 1e-49 unknown protein Potri.014G043800 [exp] 175 / 2e-52 AT3G60200 91 / 7e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019505 pacid=23181554 polypeptide=Lus10019505 locus=Lus10019505.g ID=Lus10019505.BGIv1.0 annot-version=v1.0 ATGAAGTGTAAGCAGCACCCCTGCGATCTCAGCAGCAGCATCGGTGTCTGCGCCTCCTGCCTCCGCAATCGACTCTCCGCTCTCGTCGCCGCTCAGTCCC ACCTGCACCACCAATCTTCTTCTTCTTCGTCTCCTTGGCTCCCTCGATCTCATTCTCGTCCAGCTTCTTCCCAAGCGCCGTGCAAATCTGAATCCAACAA CCTTGCTGCTGCTAATCATCATCATCCGCCTCTCCTCTTCCCTCGCTCCGTCTCCCCTTACGTCGCCCGTCGCAAATCACACGGCCACGAGGACGGCGAC GGCGACGGAATCGACGACTCCTGGTCCCACCACCACCTGCGGTTCCTTACTACTCCACAGCTAGGCCCTACCTACTCATCCTCGACGGCCTCAACTTGCC AAAGGAAGTACGCCAAGCTATCTCTATTGGCCAATTTTTTCAGGTCCAGATCCGACAAACTGCGGAATCCAGATCTCGTCCCCGCGTCTGCCGCTCGGGA TTCTGCTCAGCCGTCCTCTTCTTCCTGGTTCTCTTCTATCTTCCACAGTCGGCGGAAGAATAAGCATCAACCCGTCCCCGAATCGCTCCCTCGTCGGAGG CGAGGTCGCGGAATGTCTCCAGCGGATTTCGAGGAATGCGATCCGACTGGAATCTGCGATGATCCATGGGACTCGAAGAGAACGCCGACGTCGGCGGGGA GGCGGGGGAAAACGAGGAATATGAACAACAGTGGGAACAATAATCCGGCGGCGGGTTTTGCATTCTGTCTGAGCCCTCTTGTTCGAGCCAGCCCCAACCC CCACTGGAACCAGAAAGGGACTCTGCCGCCTGACTTGGGAGAGGTCCGGGTGGCGGTGAAGCCGAACCTATCCACTGCGGCGTCGTTTTGCGCAAACCGG TCGAGGAAGCTTGCCGACTTCGGCAGACGGTGA
AA sequence Show only first row Show all	>Lus10019505 pacid=23181554 polypeptide=Lus10019505 locus=Lus10019505.g ID=Lus10019505.BGIv1.0 annot-version=v1.0 MKCKQHPCDLSSSIGVCASCLRNRLSALVAAQSHLHHQSSSSSSPWLPRSHSRPASSQAPCKSESNNLAAANHHHPPLLFPRSVSPYVARRKSHGHEDGD GDGIDDSWSHHHLRFLTTPQLGPTYSSSTASTCQRKYAKLSLLANFFRSRSDKLRNPDLVPASAARDSAQPSSSSWFSSIFHSRRKNKHQPVPESLPRRR RGRGMSPADFEECDPTGICDDPWDSKRTPTSAGRRGKTRNMNNSGNNNPAAGFAFCLSPLVRASPNPHWNQKGTLPPDLGEVRVAVKPNLSTAASFCANR SRKLADFGRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44600			unknown protein		Lus10019505 [exp]	0	1
AT3G24040			Core-2/I-branching beta-1,6-N-...		Lus10023687 [exp]	1.0	0.9143
AT5G01820		PKS24, CIPK14, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025245 [exp]	1.4	0.9065
AT5G13860		ELC-LIKE, ATELC...	ELCH-like (.1)		Lus10041612 [exp]	5.7	0.8843
AT1G10470		IBC7, ATRR1, AR...	maternal effect embryo arrest ...		Lus10029211 [exp]	6.0	0.8760
AT1G12500			Nucleotide-sugar transporter f...		Lus10006684 [exp]	8.1	0.8841
AT1G18740			Protein of unknown function (D...		Lus10018883 [exp]	14.7	0.8831
AT5G16200			50S ribosomal protein-related ...		Lus10028496 [exp]	20.1	0.8527
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Lus10010704 [exp]	21.0	0.8510
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10003201 [exp]	21.9	0.8777
AT5G53750			CBS domain-containing protein ...		Lus10042702 [exp]	22.6	0.8691

Compare expression of checked genes

Lus10019505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.