Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60190 1008 / 0 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT1G14830 946 / 0 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT2G44590 926 / 0 ADL1D DYNAMIN-like 1D (.1.2.3) AT5G42080 853 / 0 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT3G61760 837 / 0 ADL1B DYNAMIN-like 1B (.1) AT2G14120 264 / 6e-78 DRP3B dynamin related protein (.1.2.3) AT4G33650 252 / 3e-73 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT1G10290 198 / 8e-54 DRP2A, ADL6 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) AT1G59610 193 / 5e-52 DRP2B, CF1, ADL3 Dynamin related protein 2B, dynamin-like 3 (.1) AT1G60500 117 / 4e-27 DRP4C Dynamin related protein 4C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019170 [exp] 950 / 0 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10029001 [exp] 893 / 0 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10040117 [exp] 872 / 0 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10001820 [exp] 852 / 0 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10003873 [exp] 844 / 0 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10004007 [exp] 840 / 0 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1) Lus10023073 [exp] 828 / 0 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10030255 [exp] 806 / 0 AT3G61760 1052 / 0.0 DYNAMIN-like 1B (.1) Lus10014041 [exp] 246 / 4e-71 AT4G33650 1081 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G043600 [exp] 1070 / 0 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G135100 [exp] 1044 / 0 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.001G147500 [exp] 990 / 0 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.010G105900 [exp] 964 / 0 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.001G090600 [exp] 865 / 0 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.003G141000 [exp] 862 / 0 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.002G171200 [exp] 862 / 0 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.007G118300 [exp] 260 / 5e-76 AT4G33650 1067 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.017G041800 [exp] 259 / 1e-75 AT4G33650 1070 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.019G068700 [exp] 190 / 4e-51 AT1G59610 1262 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01031 [flax] [poplar] Dynamin_M Dynamin central region CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family CL0023 [flax] [poplar] PF02212 [flax] [poplar] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Lus10019506 pacid=23181492 polypeptide=Lus10019506 locus=Lus10019506.g ID=Lus10019506.BGIv1.0 annot-version=v1.0 ATGACGACTATGGAGAGCTTGATAGGTTTGGTCAACAGAATTCAGAGAGCTTGTACGGTGCTCGGCGACTATGGCGGTGGCGATACTTCTTTCTCCTCCC TTTGGGAATCTCTTCCTACTGTCGCCGTCGTCGGAGGCCAGAGCTCCGGCAAGTCTTCCGTCCTTGAAAGCATAGTTGGCAGAGATTTCCTTCCCAGAGG ATCAGGGATAGTCACAAGGAGACCCCTGGTATTGCAGCTGCACAAGACTGAAGATGGAGAAGAGGAGTATGCTGAATTTCTTCACCTTCCGAGGAGGAAG TTCACTGATTTTGGTCGGTATTTCTCTATTCCAATTATTTCTGATTTCAGTTTGCTACTAGTGAAAATGCGGCTTGATTGGGCTAAGGCTGTTCATGCAG CAATCGTGCGTCAGGAAATCCAGGATGAGACGGATAGAGTCACTGGGAAATCTAAGCAGATATCTCCTGTTCCTATTCACCTTAGCATTTACTCTCCAAA TGTTGTTAACTTAACCCTCGTTGATCTACCCGGCTTGACTAAGGTTGCAGTTGAGGGACAGCCTGAGAGCATTGTTCAAGACATTGAAATGATGGTTCGT AGCTATGTTGAGAAGCCAAATTGCCTTATACTTGCCATATCTCCGGCTAACCAAGATATAGCAACTTCTGATGCCATTAAGCTTGCAAGGGAAGTAGACG CTTCAGGTGAAAGAACATTTGGGGTGTTAACCAAGTTGGACTTGATGGACAAAGGCACTAATGCACTAGATGTTCTTGAAGGAAGATCTTACAGGCTACA ACATCCTTGGGTTGGAATCGTGAACCGATCTCAGGCCGATATTAACAAGAATGTTGACATGATTGTTGCACGGCGTAAGGAAAGGGAGTATTTTGCTACT AGTCCTGAGTATAGCCATCTAGCTAGCAAGATGGGCTCAGAATATCTTGCAAAACTTCTTTCAAAGCATTTGGAATCTGTAATTAGGTCTCGTATACCAA GTATTACGTCCATGATAAACAAAACTATTGAAGAGCTTGAATCCGAGATGGACATTCTGGGAAGGCCTATTGCACTTGATGCTGGGGCTCAATTATACAC ATTGCTAGAACTTTGTCGTGCATTTGAACGGATATTCAGGGAGCATCTGGATGGAGGCCGCCCGGGAGGTGATCGAATTTATGGGGTGTTTGACAATCAG CTTCCAGCTGCTTTGAGAAAGCTTCCATTCGATCGTCATCTTGCTATGCAGAATGTAAGGAAAGTTGTATCGCAGGCAGATGGTTACCAGCCGCATCTAA TCGCTCCAGAACAGGGATACAGACGTCTAATCGAGGGGGCTTTACATTATTTCAGAGGCCCGTCCGAGGCTTCTGTTGATGCTGTTCACTTTGTTCTGAA AGAGTTGGTCCGGAAGTCTATTGGTGAGACTCAGGAACTGAAGCGTTTTCCGACAATGCAAGCCGCATTGGCTGCTGCAGCTAATCAAGCACTGGAGAGG TTCCGGGACGACAGTAAGAAAACTGTTGTCCGACTGGTCGACATGGAGTCATCATACTTGACAGTGGATTTCTTCAGGAAGCTTCCCCAGGAGGTAGAGA AAGCAGCAGCAGGACCAGGCAATCCGGTGGTGACCCCAGCCGTTGACCGTTACAATGAGGGCCATTTCAGGAGGATCGGGTCCAATGTCTCATCTTATGT GGGGATGGTTTCGGAGACGCTGAAGAATACTGTCCCCAAGGCAATCGTGTATTGCCAAGTGAAGGAAGCTAAGCAGTCACTGCTAAGGGACTTCTACATA CAGATAGGGAAGACCGAGGGTAAGGAGCTGTCAGAATTGTTGGATGAAGACCCAGCTTTGATGGAAAGAAGGCAGCAGTGTGCAAAGAGGTTGGAGTTGT ACAAGGCAGCAAGGGATGAGATAGACTCTGTCTCATGGACTCGCTGA
AA sequence Show only first row Show all	>Lus10019506 pacid=23181492 polypeptide=Lus10019506 locus=Lus10019506.g ID=Lus10019506.BGIv1.0 annot-version=v1.0 MTTMESLIGLVNRIQRACTVLGDYGGGDTSFSSLWESLPTVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEDGEEEYAEFLHLPRRK FTDFGRYFSIPIISDFSLLLVKMRLDWAKAVHAAIVRQEIQDETDRVTGKSKQISPVPIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPESIVQDIEMMVR SYVEKPNCLILAISPANQDIATSDAIKLAREVDASGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINKNVDMIVARRKEREYFAT SPEYSHLASKMGSEYLAKLLSKHLESVIRSRIPSITSMINKTIEELESEMDILGRPIALDAGAQLYTLLELCRAFERIFREHLDGGRPGGDRIYGVFDNQ LPAALRKLPFDRHLAMQNVRKVVSQADGYQPHLIAPEQGYRRLIEGALHYFRGPSEASVDAVHFVLKELVRKSIGETQELKRFPTMQAALAAAANQALER FRDDSKKTVVRLVDMESSYLTVDFFRKLPQEVEKAAAGPGNPVVTPAVDRYNEGHFRRIGSNVSSYVGMVSETLKNTVPKAIVYCQVKEAKQSLLRDFYI QIGKTEGKELSELLDEDPALMERRQQCAKRLELYKAARDEIDSVSWTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10019506 [exp]	0	1
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031732 [exp]	1.0	0.9212
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10034055 [exp]	2.4	0.8969
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10036464 [exp]	4.9	0.8970
AT1G13570			F-box/RNI-like superfamily pro...		Lus10016297 [exp]	5.0	0.8854
AT1G44790			ChaC-like family protein (.1)		Lus10028029 [exp]	6.9	0.8665
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10039769 [exp]	7.7	0.8910
AT4G12590			Protein of unknown function DU...		Lus10027326 [exp]	8.1	0.8746
AT5G53000		TAP46	2A phosphatase associated prot...		Lus10036520 [exp]	9.6	0.8410
AT1G16560			Per1-like family protein (.1.2...		Lus10031765 [exp]	9.8	0.8573
AT5G66160		JR700, ATRMR1	ARABIDOPSIS THALIANA RECEPTOR ...		Lus10028443 [exp]	13.3	0.8413

Compare expression of checked genes

Lus10019506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.