Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20885 115 / 1e-32 RING/U-box superfamily protein (.1) AT3G43430 109 / 2e-30 RING/U-box superfamily protein (.1) AT5G41400 67 / 4e-14 RING/U-box superfamily protein (.1) AT4G00305 66 / 6e-14 RING/U-box superfamily protein (.1) AT3G61460 65 / 4e-13 BRH1 brassinosteroid-responsive RING-H2 (.1) AT3G60220 64 / 4e-12 ATL4 TOXICOS EN LEVADURA 4 (.1) AT1G63840 61 / 1e-11 RING/U-box superfamily protein (.1) AT3G62690 60 / 5e-11 ATL5 AtL5 (.1) AT2G01150 56 / 6e-10 RHA2B RING-H2 finger protein 2B (.1) AT2G42360 57 / 7e-10 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043353 [exp] 216 / 1e-71 AT5G20885 157 / 4e-49 RING/U-box superfamily protein (.1) Lus10017510 [exp] 69 / 1e-14 AT3G61460 176 / 6e-57 brassinosteroid-responsive RING-H2 (.1) Lus10028773 [exp] 68 / 3e-14 AT3G61460 169 / 4e-54 brassinosteroid-responsive RING-H2 (.1) Lus10024657 [exp] 65 / 3e-13 AT3G61460 200 / 4e-66 brassinosteroid-responsive RING-H2 (.1) Lus10032290 [exp] 65 / 5e-13 AT3G61460 200 / 2e-66 brassinosteroid-responsive RING-H2 (.1) Lus10036378 [exp] 63 / 4e-12 AT3G61460 210 / 5e-70 brassinosteroid-responsive RING-H2 (.1) Lus10021197 [exp] 63 / 7e-12 AT1G04360 268 / 2e-87 RING/U-box superfamily protein (.1) Lus10008283 [exp] 56 / 8e-10 AT3G61460 77 / 5e-18 brassinosteroid-responsive RING-H2 (.1) Lus10002194 [exp] 57 / 9e-10 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G217000 [exp] 145 / 3e-44 AT5G20885 138 / 8e-42 RING/U-box superfamily protein (.1) Potri.018G046900 [exp] 124 / 4e-36 AT5G20885 136 / 4e-41 RING/U-box superfamily protein (.1) Potri.014G087700 [exp] 62 / 2e-12 AT3G61460 220 / 2e-74 brassinosteroid-responsive RING-H2 (.1) Potri.001G101000 [exp] 62 / 3e-12 AT3G61460 171 / 9e-55 brassinosteroid-responsive RING-H2 (.1) Potri.011G150800 [exp] 60 / 2e-11 AT3G61460 69 / 1e-14 brassinosteroid-responsive RING-H2 (.1) Potri.003G130900 [exp] 60 / 3e-11 AT1G63840 197 / 4e-65 RING/U-box superfamily protein (.1) Potri.002G161900 [exp] 59 / 3e-11 AT3G61460 234 / 7e-80 brassinosteroid-responsive RING-H2 (.1) Potri.009G170460 [exp] 56 / 5e-10 AT4G38140 85 / 9e-22 RING/U-box superfamily protein (.1) Potri.004G209600 [exp] 56 / 5e-10 AT4G38140 88 / 3e-23 RING/U-box superfamily protein (.1) Potri.007G086300 [exp] 55 / 1e-09 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10019507 pacid=23181566 polypeptide=Lus10019507 locus=Lus10019507.g ID=Lus10019507.BGIv1.0 annot-version=v1.0 ATGGGCTTCTTCGCTGAAGATTCAGGCCTAATCGTCACACACATCCTCTACAAGGCAGCTCTCGTCCTCGCACTTGTCAGATGCGCTCTCTCCTGGGCTC TCAAATTATGGAACCACACCCTCATACCGCCACCGACGACGTCGTCGTCGTCGTCGTCTCACCGCCGCGGCCGCCACCACTTACCGTCCCCTCAGCAGAT CAGAGATCGCCTCATCCTCACCACTTTCGGCGACGTCGCGGAGAGGAGGACGATGCAACAAAACGACGACGCGGTGGCTACATGTGCCGTGTGCTTGAAC CAGATGAAGAAAGACGACGAGGTTCGGGAGCTGAGGAATTGCTGCCACGTGTTCCACAAGGACTGTATCGACAGGTGGATCGATCACGAGCTTGACGATC AGGAGGAGGATGACGAGAGTAATCGTCGGACTTGTCCGCTTTGCAGGACGCCTTTGCTGACTGCGTCGCAGAGCTTAGCGTGGGCTGCTGCAGCAGCAGA GCAGCAGCAGCCGAGCTGGGCGGTGGAGAGGATTCTGTACCTCTTTGGGGATGATCTGGCGCTGAGGTCACAGTGA
AA sequence Show only first row Show all	>Lus10019507 pacid=23181566 polypeptide=Lus10019507 locus=Lus10019507.g ID=Lus10019507.BGIv1.0 annot-version=v1.0 MGFFAEDSGLIVTHILYKAALVLALVRCALSWALKLWNHTLIPPPTTSSSSSSHRRGRHHLPSPQQIRDRLILTTFGDVAERRTMQQNDDAVATCAVCLN QMKKDDEVRELRNCCHVFHKDCIDRWIDHELDDQEEDDESNRRTCPLCRTPLLTASQSLAWAAAAAEQQQPSWAVERILYLFGDDLALRSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20885			RING/U-box superfamily protein...		Lus10019507 [exp]	0	1
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10018455 [exp]	1.4	0.8197
					Lus10025480 [exp]	2.8	0.7405
AT2G19110		ATHMA4, HMA4	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10006955 [exp]	6.3	0.7179
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Lus10029101 [exp]	6.8	0.6953
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10031445 [exp]	10.0	0.7539
AT5G66440			unknown protein		Lus10040435 [exp]	16.5	0.7051
AT5G06370			NC domain-containing protein-r...		Lus10029402 [exp]	17.2	0.7418
AT5G14940			Major facilitator superfamily ...		Lus10039465 [exp]	18.9	0.6969
AT2G44200			CBF1-interacting co-repressor ...		Lus10038730 [exp]	23.6	0.7188
AT1G63850			BTB/POZ domain-containing prot...		Lus10040458 [exp]	26.4	0.7389

Compare expression of checked genes

Lus10019507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.