Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26667 218 / 5e-73 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G60180 194 / 1e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G60961 177 / 5e-58 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25280 154 / 3e-47 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37250 52 / 2e-08 ADK, ATPADK1 adenosine kinase (.1) AT2G39270 50 / 1e-07 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031611 [exp] 238 / 1e-80 AT5G26667 343 / 1e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10033733 [exp] 238 / 1e-79 AT5G26667 336 / 2e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10031135 [exp] 153 / 3e-47 AT4G25280 263 / 3e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031714 [exp] 154 / 4e-44 AT4G25270 672 / 0.0 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040358 [exp] 56 / 9e-10 AT2G37250 405 / 1e-143 adenosine kinase (.1) Lus10023476 [exp] 54 / 6e-09 AT2G37250 407 / 2e-144 adenosine kinase (.1) Lus10030296 [exp] 52 / 3e-08 AT2G37250 395 / 1e-139 adenosine kinase (.1) Lus10001984 [exp] 51 / 5e-08 AT2G37250 391 / 4e-138 adenosine kinase (.1) Lus10009228 [exp] 42 / 6e-05 AT5G47840 296 / 3e-101 adenosine monophosphate kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G043300 [exp] 226 / 2e-76 AT5G26667 358 / 2e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.002G134600 [exp] 220 / 5e-74 AT5G26667 345 / 1e-122 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.014G104700 [exp] 179 / 9e-58 AT5G26667 275 / 8e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.015G129000 [exp] 151 / 2e-46 AT4G25280 301 / 6e-104 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G215300 [exp] 52 / 2e-08 AT2G37250 382 / 2e-134 adenosine kinase (.1) Potri.008G046100 [exp] 52 / 2e-08 AT2G37250 377 / 1e-132 adenosine kinase (.1) Potri.001G333100 [exp] 40 / 0.0002 AT3G01820 249 / 8e-83 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00406 [flax] [poplar] ADK Adenylate kinase
Representative CDS sequence Show only first row Show all	>Lus10019509 pacid=23181520 polypeptide=Lus10019509 locus=Lus10019509.g ID=Lus10019509.BGIv1.0 annot-version=v1.0 ATGGATTTTGAGGTTCTTACATTTGAATCTCATGCAGCTTTCTCACCGGCTACATTAACAACAGTAACATGGGAGCTTCCGTCGAAGCTGGAAACACGAA CCATGATCCAGAACATGATTAAGGAGGGAAAGATTGTGCCCTCTGAGGTGACAATAAAGCTTCTTGAGAAGGCAATACTGGATAATGGAAATGACAAATT CCTTATTGACGGTTTTCCACGCAATGAGGAAAACAGGGCTGCATTTGAAGCTGTTACAAAGATTGAGCCAGAATTCGTCCTCTTTTTTGATTGTCCAGAA GAAGAGATGGAAAGGAGGATTTTGAGTAGGAACCAGGGAAGAGAAGATGATAACATTGAGACAATAAGGAAGCGTTTCAAAGTATTTCTTGAGTCTAGCC TTCCAGTGGTTGAGTATTATGCTTCCAAGGGTAAAGTTAAGAAGCAGGTTATAGCTATAAAATTCGAGTAA
AA sequence Show only first row Show all	>Lus10019509 pacid=23181520 polypeptide=Lus10019509 locus=Lus10019509.g ID=Lus10019509.BGIv1.0 annot-version=v1.0 MDFEVLTFESHAAFSPATLTTVTWELPSKLETRTMIQNMIKEGKIVPSEVTIKLLEKAILDNGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCPE EEMERRILSRNQGREDDNIETIRKRFKVFLESSLPVVEYYASKGKVKKQVIAIKFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10019509 [exp]	0	1
AT5G11710			ENTH/VHS family protein (.1)		Lus10005498 [exp]	2.0	0.9067
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10041261 [exp]	2.0	0.9040
AT5G27490			Integral membrane Yip1 family ...		Lus10031511 [exp]	2.8	0.8708
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10006571 [exp]	3.0	0.9013
AT1G31070		GlcNAc1pUT1	N-acetylglucosamine-1-phosphat...		Lus10036227 [exp]	3.2	0.8689
					Lus10019700 [exp]	3.3	0.8687
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10033733 [exp]	3.5	0.8959
AT4G21215			unknown protein		Lus10006757 [exp]	6.2	0.8564
AT2G44060			Late embryogenesis abundant pr...		Lus10008337 [exp]	7.3	0.8147
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10028702 [exp]	8.1	0.8922

Compare expression of checked genes

Lus10019509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.