Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02205 731 / 0 CER1 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) AT1G02190 681 / 0 Fatty acid hydroxylase superfamily (.1.2) AT2G37700 671 / 0 Fatty acid hydroxylase superfamily (.1.2) AT5G57800 310 / 6e-97 CER3, FLP1, YRE, WAX2 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008895 [exp] 303 / 4e-94 AT5G57800 885 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10015499 [exp] 301 / 1e-93 AT5G57800 877 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10011472 [exp] 290 / 3e-93 AT1G02205 303 / 5e-99 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10011473 [exp] 288 / 1e-92 AT1G02205 310 / 7e-102 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10023210 [exp] 296 / 1e-91 AT5G57800 882 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10019971 [exp] 294 / 6e-91 AT5G57800 879 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10023110 [exp] 242 / 2e-73 AT1G02205 261 / 6e-81 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10023109 [exp] 88 / 9e-21 AT1G02205 87 / 3e-21 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G152900 [exp] 837 / 0 AT1G02205 789 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G152600 [exp] 836 / 0 AT1G02205 788 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G152301 [exp] 834 / 0 AT1G02205 790 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G180300 [exp] 833 / 0 AT1G02205 793 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.006G177500 [exp] 324 / 2e-102 AT5G57800 890 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Potri.018G099400 [exp] 322 / 2e-101 AT5G57800 851 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12076 [flax] [poplar] Wax2_C WAX2 C-terminal domain PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10019510 pacid=23181612 polypeptide=Lus10019510 locus=Lus10019510.g ID=Lus10019510.BGIv1.0 annot-version=v1.0 ATGGCATCAACGCCTGGAATTCTGACCGACTGGCCCTGGACACCCCTCGGACCCTTCAAGCATTTGTTATTGGCACCATGGGCGATCCAAAAGACGTACG GTATGATAGCGGGAGGGAAAGAAGGGGAAGAAAAGGACGTGTCGGGGTTCTTGATATTCCCATTCCTGATGTGGAGAATGCTCCACAACCAGCTGTGGAT CAGCCTCTCCCGATACCGAACCGCCAAGGGCAACAACCGGATCGTGGACAAAGGGATCGAGTTCGAGCAAGTCGACCGAGAGAGGGGGTGGGACGACCAG ATACTGTTCAACGGGCTGTTGTTCTACATAGGGGCCATGTCGCTGAACGGGGCGTCGCATTTGCCGTGGTGGAGATTGGACGGCGTTATCTTAACGGCGC TTCTCCACACCGGACCGGTTGAGTTTCTGTACTACTGGCTTCACAGAGCACTTCATCACCATTTCTTGTACTCGCGGTACCATTCCCACCACCACTCCTC CATCGTCACCGAACCCATCACCTCGGTGATTCATCCATTTGCGGAGCACATAGCCTATTTCGCGCTGTTCGCGACGCCAATGCTGACGACCATAGCGACA GGAACGGCATCCATCGCATCCTTCGCCGGATACCTAACCTACATCGACTTCATGAACAACATGGGACACTGCAACTTCGAATTCGTCCCGAGCTCCCTCT TCGCCATCCTCCCACCTCTCAAATACCTCCTCTACACGCCTTCCTACCACTCCCTCCACCACACCCAGTTCCGCACAAACTACGCCCTTTTCATGCCGTT TTACGACTACATCTACGGCACCTTGGACAAATCCTCCGACGAACTGTACAATGCCTCCCTCCGGAGAGGCGAGGAGTCTCCCGACGTCGTCCACCTAACT CACCTCACTACCCCTGAGTCCGTCTACCATCTCCGCCTAGGATTCGCTTACCTAGCTGCATCGCCGGCGCCGGGATCGTCCGGCGACCTCCGCCTCCTCC ACCGCCTCCTGTGGCCTGTCACTTTGTGGACGATGGCGTTGACTTGGCTCTACGGTCGCACTTCTTTTGTGCTTGAACGGCATCGCTTTGGGAAGGTTAT TCTCCAGACATGGGCCGTTCCCAAGTACAAGATCCAGTATTCAATGCAGTGGCAAAAAGAGGCGATAAATTCACTGATAGAGGACGCCATTATTGAAGCG GATGCCAAAGGGGTTAAGGAAGAAGATCTGAACGGGTATGGGGAGAAGTACGTGAGGAAGAATCCAGGACTAAGAACCAAGGTGGTGGACGGAAGCAGCC TGGCTGTTGCTATAGTCCTGAACTCTATCCCCAAGGGTACGACACAAGTGGTGATCAGAGGCACCCATTCCCTTTCCAAGGTCGCTTCCGCAATTGCCCT CTCTCTGTGCCATCGTGGACTCCAGGTGGTCGTCGCGACGAAGCAAGACTACGACAGGCTCCGACGCTGCTTCGGCACCACCACTCCACACACTAATTTG CTTCTCTCCAAATCTCACTCTACCAAGGTTTGGTTAGTGGGGGGAGGATTAAGTGAAGAGGAGCAGAGACAAGCTGGGAAAGGAACGATATTCATACCCT TCACACAGTTCCCACCAAAGAAGCTCCGTGACGACTGCTACTACCACACGACCCCAGCGCTCGTGGCTCCGAAATCCCTGGAGAACGTCGATTCTTGCGA GAATTGGTTGGGAAGAAGAGTGGTGAGCGCGTGGAGGGCCGCAGGTGTAGTGCACGCTTTAGAGAAGTGGCCGGAGCACGAGTGCGGGCAGCATATGTTG GACGTGGACAAAGTATGGGAAGCAGCTCTTCGCCATGGGTTCCTCCCTATTCAGTCTCCTGCATATATATCCATGTAA
AA sequence Show only first row Show all	>Lus10019510 pacid=23181612 polypeptide=Lus10019510 locus=Lus10019510.g ID=Lus10019510.BGIv1.0 annot-version=v1.0 MASTPGILTDWPWTPLGPFKHLLLAPWAIQKTYGMIAGGKEGEEKDVSGFLIFPFLMWRMLHNQLWISLSRYRTAKGNNRIVDKGIEFEQVDRERGWDDQ ILFNGLLFYIGAMSLNGASHLPWWRLDGVILTALLHTGPVEFLYYWLHRALHHHFLYSRYHSHHHSSIVTEPITSVIHPFAEHIAYFALFATPMLTTIAT GTASIASFAGYLTYIDFMNNMGHCNFEFVPSSLFAILPPLKYLLYTPSYHSLHHTQFRTNYALFMPFYDYIYGTLDKSSDELYNASLRRGEESPDVVHLT HLTTPESVYHLRLGFAYLAASPAPGSSGDLRLLHRLLWPVTLWTMALTWLYGRTSFVLERHRFGKVILQTWAVPKYKIQYSMQWQKEAINSLIEDAIIEA DAKGVKEEDLNGYGEKYVRKNPGLRTKVVDGSSLAVAIVLNSIPKGTTQVVIRGTHSLSKVASAIALSLCHRGLQVVVATKQDYDRLRRCFGTTTPHTNL LLSKSHSTKVWLVGGGLSEEEQRQAGKGTIFIPFTQFPPKKLRDDCYYHTTPALVAPKSLENVDSCENWLGRRVVSAWRAAGVVHALEKWPEHECGQHML DVDKVWEAALRHGFLPIQSPAYISM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10019510 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10005413 [exp]	3.6	0.9682
AT4G38260			Protein of unknown function (D...		Lus10016023 [exp]	5.7	0.9626
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10003142 [exp]	6.3	0.9306
AT2G23945			Eukaryotic aspartyl protease f...		Lus10023451 [exp]	6.8	0.9156
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10032806 [exp]	7.2	0.9557
AT4G02320			Plant invertase/pectin methyle...		Lus10001467 [exp]	7.3	0.9588
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10004771 [exp]	7.5	0.9552
AT1G13330		AHP2	Arabidopsis Hop2 homolog (.1)		Lus10021690 [exp]	7.5	0.8234
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030409 [exp]	8.2	0.9585
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	9.2	0.9585

Compare expression of checked genes

Lus10019510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.