Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44580 434 / 3e-152 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043355 [exp] 705 / 0 AT2G44580 452 / 5e-159 zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346900 [exp] 492 / 1e-174 AT2G44580 463 / 3e-163 zinc ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09724 [flax] [poplar] Dcc1 Sister chromatid cohesion protein Dcc1
Representative CDS sequence Show only first row Show all	>Lus10019511 pacid=23181512 polypeptide=Lus10019511 locus=Lus10019511.g ID=Lus10019511.BGIv1.0 annot-version=v1.0 ATGTCTTGTTACACAGGCGCTGAGGCTGTTCTAAATCTCCAACCCAGCTCTTCCTTATCTATTGCCTATGACACTCTTTTCGGATCTGGTGACAATCTTT TGCTCCTTGAGCTAAATGATAATATGCTTCCTGATCTCCTTCACCAGAGGGTAACGTTAAGAGGCAAGCCAGATGAAGACACGGTTCTATGCACTCAGTC GAAAACGTACGCTGTCAAATTCGTTGGAACTTCTAATTCGGTATTTCTTATACCCCCGTCAGCTCATGGCCAGAAACCTGTTGCATCTGTTGTTGAAATA TCTGCTGGTACTATGGAGCTCGTCGAGATTGCTCCCAAGCTAGACAGGCTTAAAACTCTTCTTCTGCAGAAGCCTTACAGTTCGATGGATGAATTACAGG CTGACAATATGGAAGAGGATGATTCAAAGGAAAATGAATCCGGATTGTACAGATGGCGCGATCTGGTAAACAGGATTCAAGCGAGTGATGAGGAATTGAG GAGTGGATTGCAGTCTCTCTCGGCTGTGGAGATTGATGGTTATTGGAGAATTGTAGATGAGAAGTATATGGATACCGTTCTGAAGATGCTGTTGCATAAT TCTGTTTTGAACGACTGGTCGCTCGATGCACTCCTTGAAGACGAAGTATTGAATTTTCTGGTAAGTGATGGATTCCCGCGAAGGCTAGCGTACCATTGTT TGGATGTTTTTGGCAGTAAGGTCGATAGGCTTGAAGGCGAAAGCTGCGTGTGGAGGCTGGACGAAAGGCGAGTGTGTGTTCATTTTGCAAGGCAGGTGTT GGGAGTTGGAAAGATGAAATTGGAGAGCTTTATGGATAAGTGGTCGAAGAAGAACCCAGATGGGATGCATTTGAGTTTGGATATGTTGGAAGGTGAAGTC CTGAGTGAAAAAGTCGGAATAGAGACGTGGATTCGTGGTTTCAGAGTGATGAATCTGCCTTCTAACCCGGCTGAGCGTTTCGGGATCCTTTTCAGAGAAC GCCCCAAATGGGAGTGGAAGGATTTGCAGCCTTACATCAGAGATTTGAAAGTACCGGGTCTTTCCTCAGAAGGGTTGCTGCTAAAGTACACAAGAAGGAC ACAAGCTACGCAGGATGCAGAACCTGTTTTCTCTGCAAGATAA
AA sequence Show only first row Show all	>Lus10019511 pacid=23181512 polypeptide=Lus10019511 locus=Lus10019511.g ID=Lus10019511.BGIv1.0 annot-version=v1.0 MSCYTGAEAVLNLQPSSSLSIAYDTLFGSGDNLLLLELNDNMLPDLLHQRVTLRGKPDEDTVLCTQSKTYAVKFVGTSNSVFLIPPSAHGQKPVASVVEI SAGTMELVEIAPKLDRLKTLLLQKPYSSMDELQADNMEEDDSKENESGLYRWRDLVNRIQASDEELRSGLQSLSAVEIDGYWRIVDEKYMDTVLKMLLHN SVLNDWSLDALLEDEVLNFLVSDGFPRRLAYHCLDVFGSKVDRLEGESCVWRLDERRVCVHFARQVLGVGKMKLESFMDKWSKKNPDGMHLSLDMLEGEV LSEKVGIETWIRGFRVMNLPSNPAERFGILFRERPKWEWKDLQPYIRDLKVPGLSSEGLLLKYTRRTQATQDAEPVFSAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44580			zinc ion binding (.1)		Lus10019511 [exp]	0	1
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10026954 [exp]	10.1	0.8898
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10040517 [exp]	19.7	0.8871
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	21.4	0.8860
AT2G37960			unknown protein		Lus10035544 [exp]	23.5	0.8706
AT5G52910		ATIM	timeless family protein (.1)		Lus10038831 [exp]	25.5	0.8858
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10018715 [exp]	30.7	0.8833
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	33.3	0.8810
AT3G42660			transducin family protein / WD...		Lus10034648 [exp]	37.9	0.8781
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10019592 [exp]	38.9	0.8786
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10038142 [exp]	40.9	0.8772

Compare expression of checked genes

Lus10019511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.