Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05160 494 / 6e-173 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT2G32440 484 / 7e-169 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT3G19270 150 / 3e-40 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT5G45340 142 / 3e-37 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 142 / 3e-37 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G05690 141 / 6e-37 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT4G36380 137 / 3e-35 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT2G29090 132 / 7e-34 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT1G19630 126 / 2e-31 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) AT3G13730 125 / 2e-31 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043357 [exp] 712 / 0 AT2G32440 643 / 0.0 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) Lus10036670 [exp] 213 / 2e-63 AT1G05160 305 / 2e-98 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10036671 [exp] 211 / 7e-63 AT1G05160 284 / 1e-90 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10033105 [exp] 201 / 7e-59 AT1G05160 305 / 2e-98 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10042652 [exp] 157 / 1e-42 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10021725 [exp] 149 / 5e-40 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10016515 [exp] 148 / 2e-39 AT2G29090 554 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Lus10005075 [exp] 146 / 4e-39 AT5G38970 644 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10034768 [exp] 144 / 9e-38 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G179100 [exp] 519 / 0 AT1G05160 741 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.013G161800 [exp] 499 / 7e-175 AT1G05160 694 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.012G071300 [exp] 193 / 4e-56 AT1G05160 285 / 9e-91 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.008G067500 [exp] 150 / 3e-40 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.014G029100 [exp] 146 / 6e-39 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G117700 [exp] 145 / 2e-38 AT5G38970 655 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Potri.010G189800 [exp] 145 / 3e-38 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.002G126100 [exp] 142 / 3e-37 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.017G099000 [exp] 142 / 3e-37 AT3G30180 648 / 0.0 brassinosteroid-6-oxidase 2 (.1) Potri.004G235400 [exp] 140 / 8e-37 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10019513 pacid=23181528 polypeptide=Lus10019513 locus=Lus10019513.g ID=Lus10019513.BGIv1.0 annot-version=v1.0 ATGTTCGGACGACCCAGTGTGTTCGTAACAACTCCGGAAACATGCCGCCGTGTACTAAACGACGACGATTCATTCAAGCCGGGATGGCCCACTTCCACCG TGGAGCTCATGGGCAAGAACTCCTTCATCGGCATCTCCCCGGAAGAGCACAAGCGCCTCCGCCGACTGACCGCCGCTCCGGTCAACGGCCACGAGGCACT CTCCCTGTACATGGGCTTCATCGGGGAGAGGGTTTCCGCTGCGCTCGAGGAATGGTCTTCTTCTCCAGAACCCTTGGAGTTTCTCACTCACCTGCGCAGA CTCACTTTCAGAATCATAATGTTCATCTTCATGGGAACCGAGAGCGAGGACGTCATGGAAATCCTTGAGAGGGAGTACACCGCCCTCAACCATGGCGTCC GCGCCATGGCTATCAACCTCCCTGGTTTCGCTTACTACAAAGCCCTCAAGGCTCGTAAGAAAGTGGTGGCTGTGTTGCAATCAATCTTAGATGAGCGCAG AAGTAGAATGAAACTGGAGAAGGGGGAAACTGGCAACAAAGAAGAGGAAAAGACTAAGAAGAAGAAGAAGAAAACGGACATGATGGATGAATTGATGAGA GTGGAAGATGAAAATGGTGGGAAACTAAGAGATGAAGAGATCATAGATATTCTGCTAATGTACTTGAATGCTGGACATGAATCCTCTGCTCATGTCACCA TGTGGGCTACTCTTTTACTTCAGCAGCACCCTCATTGTCTTCAAAAAGCCAGAGTACGTTGCGAGATTATCATTCCGATAACATACGGTGTTCCATCTAT GTATCATCTCAAATCAATTGATCATTGCTTAATGCCTCAGGAGGAGCAAGAGGAAATCGTGGGACGAAGGCCTGCAGATCAAAAAGGCATATTGACCTTC AAGGAAATTCGCCAGATGGATTATCTTAACAAGGTGATCGACGAGACACTGCGATATGTAACATTCTCGCTCACTGTGTTCAGGGAAGCCAAAACGAATG TGCATATGGACGGTTATGTGATTCCAAAGGGTTGGAGGGTGCTGGTGTGGTTCAGGACCGTTCATTTCGAGGCTGACGTATATCCAAATCCAAGAGAGTT CAACCCGTCCAGATGGGATAATTATACAGGAAAGGCGGGTAGTTTCCTTCCCTTTGGAGCAGGAAGTTATATGTGCCCTGGGAATGATCTAGCCAAGATT GAGATTGCAGCTTTCTTGCACTATTTCCTGCTCAATTATGAGCTCGAAAGAGTGAATCCGGAATGCCCGACCAGGCACCTGCCTCACCCGCGACCAAAAG ACAACTGCTTGGGTTGGATAAAGAAGAAGAAGCAGCAGCATGCTCTGCCATCAACTGTCTAA
AA sequence Show only first row Show all	>Lus10019513 pacid=23181528 polypeptide=Lus10019513 locus=Lus10019513.g ID=Lus10019513.BGIv1.0 annot-version=v1.0 MFGRPSVFVTTPETCRRVLNDDDSFKPGWPTSTVELMGKNSFIGISPEEHKRLRRLTAAPVNGHEALSLYMGFIGERVSAALEEWSSSPEPLEFLTHLRR LTFRIIMFIFMGTESEDVMEILEREYTALNHGVRAMAINLPGFAYYKALKARKKVVAVLQSILDERRSRMKLEKGETGNKEEEKTKKKKKKTDMMDELMR VEDENGGKLRDEEIIDILLMYLNAGHESSAHVTMWATLLLQQHPHCLQKARVRCEIIIPITYGVPSMYHLKSIDHCLMPQEEQEEIVGRRPADQKGILTF KEIRQMDYLNKVIDETLRYVTFSLTVFREAKTNVHMDGYVIPKGWRVLVWFRTVHFEADVYPNPREFNPSRWDNYTGKAGSFLPFGAGSYMCPGNDLAKI EIAAFLHYFLLNYELERVNPECPTRHLPHPRPKDNCLGWIKKKKQQHALPSTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10019513 [exp]	0	1
AT5G19875			unknown protein		Lus10034527 [exp]	13.3	0.7899
AT5G02140			Pathogenesis-related thaumatin...		Lus10003962 [exp]	21.3	0.7827
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10038761 [exp]	28.4	0.7445
AT4G23410		TET5	tetraspanin5 (.1)		Lus10041411 [exp]	31.4	0.7725
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Lus10009472 [exp]	32.4	0.7513
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10022141 [exp]	39.9	0.7589
					Lus10003879 [exp]	40.2	0.7497
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10038760 [exp]	42.5	0.6885
AT1G14730			Cytochrome b561/ferric reducta...		Lus10034427 [exp]	52.2	0.7457
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10003023 [exp]	69.4	0.7111

Compare expression of checked genes

Lus10019513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.