Gene [FLAX] | FIBexDB

External link

Symbol

Arabidopsis homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT2G44520	458 / 1e-151		COX10	cytochrome c oxidase 10 (.1)

Paralogs

Show only best Show top 10

Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10043358 [exp]	762 / 0	AT2G44520	501 / 6e-177	cytochrome c oxidase 10 (.1)
Lus10033224 [exp]	44 / 0.0009	AT4G23660	456 / 3e-160	polyprenyltransferase 1 (.1.2.3)

Poplar homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.002G216100 [exp]	488 / 3e-163	AT2G44520	488 / 2e-171	cytochrome c oxidase 10 (.1)
Potri.005G093600 [exp]	47 / 6e-05	AT4G23660	413 / 2e-143	polyprenyltransferase 1 (.1.2.3)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0613 [flax] [poplar]	Terp_synthase	PF01040 [flax] [poplar]	UbiA	UbiA prenyltransferase family

Representative CDS sequence

Show only first row Show all

>Lus10019514 pacid=23181519 polypeptide=Lus10019514 locus=Lus10019514.g ID=Lus10019514.BGIv1.0 annot-version=v1.0

ATGTGGAGAAACTCCGCCAAGTTTTTCCGGAACACCGGCGTCGGCGTATTATCGCCTTCCTCCGTTTACTCCCATAGCAGCTACCGTTCTGTACCCAACT

CTGTTTTCCGGTCACCATCTGTTCCAGCTGCTCTCGCCTCTCATTCCCCTTCAGATCCTTCAAGATTAGGGTTTCTCCCCGCCAGATCAGATGCGATCCG

ACCTCTATCTTCGCTTACTTCCAACCCAGCCGCTGCAATTGCTACCTTGCCGCATGGAGTTGAATTGGCTCGTAATTACGGCCGCTGCTTTTGGGAGCTC

TCCAAAGCTCGTCTAAGTATGCTGGTTGTTGCTACTTCTGGAACCGGATATGTTCTAGGGAGCGGAAGTGTTATAGACTTGGCGGGACTTTGTTGGACAT

GTACTGGTACCATGATGGTTGCAGCTTCTGCTAACTCATTGAATCAGGTCTTTGAGGTCAGTAATGATGCCAAGATGAAAAGAACAAGATTGAGGCCACT

TCCTTCAGGGCGCATGACAGTTCCTCAAGCTGTGGCTTTTGCATCTTCTGTTGGCTTAGCCGGCACTTCTTTATTAGCATGCAAGGCTAATATGATGGCA

ACAGGGCTTGCAGCATCCACCCTGGTCCTATATGCATTTGTTTACACACCATTGAAGCAGACCCGCCCTGTCAACACGTGGGTTGGAGCTGTCGTTGGTG

CCATTCCGCCACTTTTAGGGTGGGCTGCTGCTTCTGGCCAGATTTCTCTTAATGCAATGATTCTTCCTGCTGCTCTCTACTTTTGGCAAATACCCCATTT

TATGGCACTTGCATATATGTACAAGATGCTCTCCCTTGCTGACACTAGTGGCCGGAGAACTGCCTTGGTAGCCTTGAGAAATTGCATTTATCTGGTGCCC

TTGGGGTTTCTGGCTTATGATTGGGGTATGGCTTCTGGGTGGTTTTGTGTCGAATCAACGATACTGACCCTTGCAATCGGCGCCTCAGCCTTTTCATTTT

ACCGGGAGCCAACGATTGAGAAAGCAAAGAGGATGTTTTATGCCAGCCTACTCTACCTGCCGATATTTATGACCGGGATCCTCGTACACCGAAACACAGA

GATGTCGACAACTGAGTTATCGGCTCCAGTGCGTACACAGTTGGTAGAAGAAGAGAGAAACAGTAAGAAGCAGAGGAAAAAGGAAGTGGGTGCGAAAGCA

GTACGTCCACCAGTGGCGTATGCCTCGGTTGGCCCCTTCCCTTTCCTTACAACCGCTTCACACCCACCCTTCTTGGCGCTGTNNNNNNNNNNNNNNNNNN

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGATTGA

AA sequence

Show only first row Show all

>Lus10019514 pacid=23181519 polypeptide=Lus10019514 locus=Lus10019514.g ID=Lus10019514.BGIv1.0 annot-version=v1.0

MWRNSAKFFRNTGVGVLSPSSVYSHSSYRSVPNSVFRSPSVPAALASHSPSDPSRLGFLPARSDAIRPLSSLTSNPAAAIATLPHGVELARNYGRCFWEL

SKARLSMLVVATSGTGYVLGSGSVIDLAGLCWTCTGTMMVAASANSLNQVFEVSNDAKMKRTRLRPLPSGRMTVPQAVAFASSVGLAGTSLLACKANMMA

TGLAASTLVLYAFVYTPLKQTRPVNTWVGAVVGAIPPLLGWAAASGQISLNAMILPAALYFWQIPHFMALAYMYKMLSLADTSGRRTALVALRNCIYLVP

LGFLAYDWGMASGWFCVESTILTLAIGASAFSFYREPTIEKAKRMFYASLLYLPIFMTGILVHRNTEMSTTELSAPVRTQLVEEERNSKKQRKKEVGAKA

VRPPVAYASVGPFPFLTTASHPPFLALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD

DESeq2's median of ratios [FLAX]

Coexpressed genes

Only top 10 genes are shown Show all Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At alias	At description	Locus	MR	r
AT2G44520	COX10	cytochrome c oxidase 10 (.1)	Lus10019514 [exp]	0	1
AT4G24200		Transcription elongation facto...	Lus10009128 [exp]	9.3	0.7456
AT3G18290	BTS, EMB2454	embryo defective 2454, BRUTUS,...	Lus10005111 [exp]	9.6	0.7265
AT2G44520	COX10	cytochrome c oxidase 10 (.1)	Lus10043358 [exp]	15.5	0.7032
AT2G31890	ATRAP	RAP (.1)	Lus10006143 [exp]	15.7	0.6651
AT3G11760		unknown protein	Lus10029364 [exp]	18.2	0.6683
ATCG00680	ATCG00680.1, PS...	photosystem II reaction center...	Lus10006593 [exp]	24.0	0.7080
AT4G35870		early-responsive to dehydratio...	Lus10028409 [exp]	26.4	0.7148
ATCG00680	ATCG00680.1, PS...	photosystem II reaction center...	Lus10001686 [exp]	26.9	0.7076
AT1G13940		Plant protein of unknown funct...	Lus10026640 [exp]	28.8	0.6873
AT1G54920		unknown protein	Lus10029936 [exp]	31.5	0.6789

Lus10019514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10019514 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10019514 coexpression network