Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21630 1028 / 0 Sec23/Sec24 protein transport family protein (.1) AT4G14160 944 / 0 Sec23/Sec24 protein transport family protein (.1.2.3) AT3G23660 939 / 0 Sec23/Sec24 protein transport family protein (.1.2) AT1G05520 909 / 0 Sec23/Sec24 protein transport family protein (.1) AT5G43670 590 / 0 Sec23/Sec24 protein transport family protein (.1) AT4G01810 123 / 8e-29 Sec23/Sec24 protein transport family protein (.1) AT2G27460 58 / 2e-08 sec23/sec24 transport family protein (.1) AT3G07100 50 / 9e-06 AtSEC24A, SEC24A, ERMO2 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043359 [exp] 1455 / 0 AT2G21630 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10041256 [exp] 944 / 0 AT1G05520 1319 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021963 [exp] 938 / 0 AT1G05520 1321 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10022219 [exp] 582 / 0 AT5G43670 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10008800 [exp] 496 / 1e-166 AT5G43670 912 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10008801 [exp] 452 / 1e-149 AT5G43670 809 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021964 [exp] 328 / 4e-106 AT1G05520 486 / 9e-168 Sec23/Sec24 protein transport family protein (.1) Lus10007190 [exp] 134 / 5e-32 AT4G01810 1314 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10010078 [exp] 129 / 1e-30 AT4G01810 1317 / 0.0 Sec23/Sec24 protein transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G178500 [exp] 1291 / 0 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.001G307400 [exp] 937 / 0 AT1G05520 1235 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.019G003100 [exp] 927 / 0 AT3G23660 1181 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.002G238500 [exp] 896 / 0 AT2G21630 767 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.010G078200 [exp] 500 / 2e-166 AT5G43670 1136 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.008G161300 [exp] 492 / 2e-163 AT5G43670 1115 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G187100 [exp] 135 / 1e-32 AT4G01810 1352 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G112600 [exp] 133 / 7e-32 AT4G01810 1364 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.004G201800 [exp] 50 / 5e-06 AT2G27460 1266 / 0.0 sec23/sec24 transport family protein (.1) Potri.008G049700 [exp] 44 / 0.0003 AT3G07100 1306 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00626 [flax] [poplar] Gelsolin Gelsolin repeat CL0092 [flax] [poplar] PF04810 [flax] [poplar] zf-Sec23_Sec24 Sec23/Sec24 zinc finger CL0128 [flax] [poplar] vWA-like PF04811 [flax] [poplar] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [flax] [poplar] PF08033 [flax] [poplar] Sec23_BS Sec23/Sec24 beta-sandwich domain CL0128 [flax] [poplar] PF04815 [flax] [poplar] Sec23_helical Sec23/Sec24 helical domain
Representative CDS sequence Show only first row Show all	>Lus10019516 pacid=23181550 polypeptide=Lus10019516 locus=Lus10019516.g ID=Lus10019516.BGIv1.0 annot-version=v1.0 ATGGCGGAATTCCTGGAGCTGGAAACTCAGGACGGCGTACGGATGCCATGGAACGTGGTTCCGGGGACGAAGCAAGAAGCGAGCAAGTGCGTCGTCCCGA TCTCCGCAATATACACTCCGATCAAGTCCTTCCCCAACATGCCCGTCCTCCCTTACGGTCCTCTCCGGTGCCGGACGTGCCGTTCCGTGCTTAACCCTTT CTCGAATGTCGATTTCGCGGCAAAGATCTGGATCTGCCCTTTCTGTCACCAGCGCAATCACTTCCCTCCGCAGTATGCATCCATCAGCGACGAGAACCTC CCAGCGGAGCTCTTCTCGCAGTACACGACGATCGAGTACGAGTCTCCAGGTGACAATTTGTCGTCCTCCTCCTCTGTATTCATCTTCGTCATCGACACTT GTATCATTGAGGAGGAGATGGCCTTCCTTAAGTCGGCCTTGTCCCAGGCCATCGAGCTTCTTCCTGAGAATTCCCTCGTTGGCTTGATCACTTTCGGGAC CTTTGTTCACGTTCATGAGCTTGGATTTGGCCAGCTCCCAAAGACCTACGTCTTTCAAGGCTCTAAAGACGTAACCAAGGAACAGCTGCTGGACAAGATG AGCTTTTTCCTCAAGAAACCCAAACCTACAACGGGTGTAATTGCCGGCTCCAGAGACGGCCTCTCTTCCGAGAGCATTTCCCGCTTTCTTTTGCCCGCCT CCGATTGCGGCTTCGCGCTTAATTCGGTTCTAGAGGAGTTGCAGAAAGATCCATGGGCTGTACCAGCTGAGCAGAGGGCTACCAGATGCACCAGCACTGC TCTCAGTGTAGCTGCATGTTTGTTGGGAGCTTGTGTTCCTGGTTCTGGTGCTAGAATAATGGCGTTCGTGGGTGGTCCATCCACTGAGGGTCTGGGTGCT ATTGTATCAAAGAATCTTTCTGAGCCTATTCGATCTCACAAAGACTTGGATAAAGATTCTGCACCATATTATCACAAAGCCGTTAGGTTCTATGAGGAAT TAGCGAAGCAGCTAGTTCATCAAGGTCATGTGCTGGATGTCTTTGCTTGTGCCCTTGATCAGGTGGGAGTTGCTGAGCTCAAAGTTGCAATTGAAAGAAC TGGTGGCCTTGTTGTGCTTGCAGAAAGCTTTGGCCATCCAGTATTCAAGGACTCTCTTAGACGTGTTTTCCAATCAGGCGACCATGACCTTGGACTCTCA TCAAATGGAATCTTTGAGATTAACTGCTCAAAGGATATTAAAGTTCAAGGTATCATAGGCCCTTGCGCATCTCTTGGGAAGAAAGGTCATTTATCCTCCG ACACTGTCATCGGTCAAGGAAATACCAGTGCATGGAAGATGTGTAGCCTTGACAAGTCTACATCTTTGTGTCTTATATTTGACATTGTTAAGAAAGATAG CCCAGAACTTGCAGTTCAACCCTCAAGCAATCAGTTTTATTTCCAATTTTTAACTTATTACCAGCATAGCAGTGGTCAAATGAGGCTTCGTGCTACAACC CTTTCAAGGAGATGGGTCACGGGAGCTGGAAGTTTACCGGACTTGATTGCTGGTTTTGACCAAGAAGCAGCAGCTGTCGCCATGGCTCGTCTGGTGTCCT TCAAGATGGAAGTTGAGGCTGAGTTTGACCCGATAAGATGGCTAGATAAAGCTCTAATCAATCTTTGTTCTCGATTTGGAGATTATCAGAAAGAGAGCCC ATCATCTTTCAGTCTATCTCCACGGCTCTCAATATTTCCTCAGTTTATGTTTCATTTACGGCGTTCTCAGTTTGTCCAGGTGTTCAACAATAGTCCTGAT GAGACTGCATACTTACGGATGATATTGAACAGAGAGAATGTAGCCAATTCAATTGTGATGATACAGCCTTCACTGATCTCTTACTCATTTCATTCGGCAC CAGAACCTGTTCTTTTGGATGTGGCAGCTATTGCGGCCGATAGAATCCTTCTTTTGGACTCTTACTTTACCGTGGTTGTTTTCCATGGGGCAACTATTGC TCAGTGGCGCAAAGCTGGGTACCATCATCAACAAGAACACCAGGCATTCGCGCAGTTGCTACAAGCACCTACTGATGATGCAGATAGCATAATAAAGGAA AGGTTTCCCATTCCTCGTTTAGTAGTTTGTGATCAGCACGGTTCACAGGCACGATTTCTGCTGGCGAAACTGAATCCGTCTGCAACGTATAATACAGATG CTCCTGTTCCGGGGGGAGACATTTTGTTTACGGATGATGTGAGCTTTGAGGTCTTCTTGGATCATCTACAGAGACTAACCGTTCAATGA
AA sequence Show only first row Show all	>Lus10019516 pacid=23181550 polypeptide=Lus10019516 locus=Lus10019516.g ID=Lus10019516.BGIv1.0 annot-version=v1.0 MAEFLELETQDGVRMPWNVVPGTKQEASKCVVPISAIYTPIKSFPNMPVLPYGPLRCRTCRSVLNPFSNVDFAAKIWICPFCHQRNHFPPQYASISDENL PAELFSQYTTIEYESPGDNLSSSSSVFIFVIDTCIIEEEMAFLKSALSQAIELLPENSLVGLITFGTFVHVHELGFGQLPKTYVFQGSKDVTKEQLLDKM SFFLKKPKPTTGVIAGSRDGLSSESISRFLLPASDCGFALNSVLEELQKDPWAVPAEQRATRCTSTALSVAACLLGACVPGSGARIMAFVGGPSTEGLGA IVSKNLSEPIRSHKDLDKDSAPYYHKAVRFYEELAKQLVHQGHVLDVFACALDQVGVAELKVAIERTGGLVVLAESFGHPVFKDSLRRVFQSGDHDLGLS SNGIFEINCSKDIKVQGIIGPCASLGKKGHLSSDTVIGQGNTSAWKMCSLDKSTSLCLIFDIVKKDSPELAVQPSSNQFYFQFLTYYQHSSGQMRLRATT LSRRWVTGAGSLPDLIAGFDQEAAAVAMARLVSFKMEVEAEFDPIRWLDKALINLCSRFGDYQKESPSSFSLSPRLSIFPQFMFHLRRSQFVQVFNNSPD ETAYLRMILNRENVANSIVMIQPSLISYSFHSAPEPVLLDVAAIAADRILLLDSYFTVVVFHGATIAQWRKAGYHHQQEHQAFAQLLQAPTDDADSIIKE RFPIPRLVVCDQHGSQARFLLAKLNPSATYNTDAPVPGGDILFTDDVSFEVFLDHLQRLTVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21630			Sec23/Sec24 protein transport ...		Lus10019516 [exp]	0	1
AT1G61850			phospholipases;galactolipases ...		Lus10007661 [exp]	7.0	0.7979
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Lus10023796 [exp]	8.8	0.7842
AT5G54920			unknown protein		Lus10016477 [exp]	16.3	0.7897
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10006051 [exp]	16.5	0.7480
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10021796 [exp]	17.0	0.7641
AT5G11040		AtTRS120	TRS120 (.1)		Lus10008127 [exp]	22.3	0.7779
AT1G15780			unknown protein		Lus10015323 [exp]	26.2	0.7261
AT5G45160			Root hair defective 3 GTP-bind...		Lus10040630 [exp]	31.1	0.7458
AT4G32640			Sec23/Sec24 protein transport ...		Lus10004122 [exp]	35.8	0.7748
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10023472 [exp]	38.2	0.6889

Compare expression of checked genes

Lus10019516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.