Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26110 124 / 8e-34 Protein of unknown function (DUF761) (.1) AT5G56980 69 / 3e-13 unknown protein AT4G26130 60 / 3e-10 unknown protein AT5G47920 46 / 6e-06 unknown protein AT4G16790 42 / 0.0003 hydroxyproline-rich glycoprotein family protein (.1) AT5G38700 40 / 0.0004 unknown protein AT4G04990 41 / 0.0005 Protein of unknown function (DUF761) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024988 [exp] 297 / 4e-101 AT2G26110 172 / 1e-51 Protein of unknown function (DUF761) (.1) Lus10026978 [exp] 251 / 2e-84 AT2G26110 122 / 2e-33 Protein of unknown function (DUF761) (.1) Lus10025985 [exp] 78 / 6e-17 AT5G56980 82 / 4e-18 unknown protein Lus10014282 [exp] 69 / 8e-14 AT5G56980 84 / 1e-18 unknown protein Lus10004758 [exp] 45 / 4e-05 AT4G16790 72 / 5e-13 hydroxyproline-rich glycoprotein family protein (.1) Lus10011239 [exp] 42 / 0.0004 AT1G11220 232 / 1e-73 Protein of unknown function (DUF761) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G228800 [exp] 124 / 1e-33 AT2G26110 142 / 5e-40 Protein of unknown function (DUF761) (.1) Potri.018G053000 [exp] 118 / 1e-31 AT2G26110 167 / 2e-49 Protein of unknown function (DUF761) (.1) Potri.006G152200 [exp] 69 / 1e-13 AT5G56980 103 / 2e-25 unknown protein Potri.001G171701 [exp] 49 / 2e-07 AT1G15385 53 / 7e-11 unknown protein Potri.003G062300 [exp] 46 / 1e-06 AT1G15385 58 / 8e-13 unknown protein Potri.001G008160 [exp] 45 / 1e-06 AT2G26110 45 / 7e-07 Protein of unknown function (DUF761) (.1) Potri.001G008080 [exp] 39 / 0.0002 AT2G26110 44 / 2e-06 Protein of unknown function (DUF761) (.1) Potri.001G406600 [exp] 41 / 0.0005 AT1G61260 192 / 1e-58 Protein of unknown function (DUF761) (.1) Potri.008G167200 [exp] 40 / 0.0006 AT4G14380 87 / 2e-21 unknown protein Potri.003G079900 [exp] 41 / 0.0007 AT4G16790 114 / 8e-27 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [flax] [poplar] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Lus10019517 pacid=23181587 polypeptide=Lus10019517 locus=Lus10019517.g ID=Lus10019517.BGIv1.0 annot-version=v1.0 ATGTTGGAGGAAACAGTATCATCAGCTGTACCTTCTTCAATCTGGGCATTGATGAGCAGCTGGTTAACCCCCACCGTTCTTTTCCTTTTCCTCAACATCA TGATTGGCACCATTGCCATTACCTCTTCCCTAGCTTCCCAAAACCCCAACCACCACAATGAAGAAGATGCCAACAATAATAATAATAATAATAAACAGCA TTACGAGCAGCAGCAGCAGCAGCTTTGGAGATCTCCATCTGTTTTGCAGAAGCTCAAGTCCATCAACTTCACGCACCCGCACAGCAGCCCGAGGAGCAAG ACGAACAAGGGCCAGAGATTAAGTTTAGCCGGACACAGACAGACAGACGAACAAGGGCCAGAGATTAAGTTTAGCCGGACACGGAAAGAGGATGAGCAAG AAGCGGTGGAGACACTTGACGAGATATACAGCAAGCTTCAGAGCAGTAACAAAGTTGTGGGGAGGTCTATGTCGGACACTAAGCCAGTAGGTGGGGAGAT CCCGAAGAAGCTCCCTAAGAAAATGAAGAAATCGGCCAGCACCAAGTCGGCGTTCGGCCATTTCGAGGAAGAGAAGATAGTAGAGGCCCGACGTCCGGCG ACGGTTAAGGAACAGAAAAGCAAGAAGATGATAAAGGAAGATGAAGAGGCGGCAGAGGATGGGGGGTGTGTGGATGCCAAGGCTGACGACTTCATAAACA AGTTTAAGCAGCAGCTGAAGCTACAGAGGCTTGATTCCATTGTCAGGTATAAGGAGATGGTTGGTAGAGGGAACGCCAAGTAG
AA sequence Show only first row Show all	>Lus10019517 pacid=23181587 polypeptide=Lus10019517 locus=Lus10019517.g ID=Lus10019517.BGIv1.0 annot-version=v1.0 MLEETVSSAVPSSIWALMSSWLTPTVLFLFLNIMIGTIAITSSLASQNPNHHNEEDANNNNNNNKQHYEQQQQQLWRSPSVLQKLKSINFTHPHSSPRSK TNKGQRLSLAGHRQTDEQGPEIKFSRTRKEDEQEAVETLDEIYSKLQSSNKVVGRSMSDTKPVGGEIPKKLPKKMKKSASTKSAFGHFEEEKIVEARRPA TVKEQKSKKMIKEDEEAAEDGGCVDAKADDFINKFKQQLKLQRLDSIVRYKEMVGRGNAK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26110			Protein of unknown function (D...		Lus10019517 [exp]	0	1
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005242 [exp]	2.0	0.8742
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10001008 [exp]	2.4	0.8624
AT5G17210			Protein of unknown function (D...		Lus10010077 [exp]	4.9	0.8425
AT5G01090			Concanavalin A-like lectin fam...		Lus10017194 [exp]	5.0	0.8382
AT5G65250			unknown protein		Lus10000635 [exp]	5.5	0.8491
AT5G23290		PFD5, PDF5	prefoldin 5 (.1)		Lus10010176 [exp]	8.3	0.7832
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10033850 [exp]	9.5	0.8042
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005244 [exp]	10.1	0.8185
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10041288 [exp]	10.9	0.8171
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10013818 [exp]	12.0	0.8087

Compare expression of checked genes

Lus10019517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.