Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44830 864 / 0 Lecithin:cholesterol acyltransferase family protein (.1) AT5G13640 781 / 0 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) AT1G04010 74 / 1e-13 ATPSAT1 phospholipid sterol acyl transferase 1 (.1) AT4G19860 54 / 2e-07 alpha/beta-Hydrolases superfamily protein (.1) AT1G27480 49 / 6e-06 alpha/beta-Hydrolases superfamily protein (.1) AT3G03310 43 / 0.0005 ATLCAT3 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015639 [exp] 781 / 0 AT5G13640 1053 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10043360 [exp] 775 / 0 AT3G44830 581 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10037657 [exp] 768 / 0 AT5G13640 1049 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10021564 [exp] 765 / 0 AT5G13640 989 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10017165 [exp] 764 / 0 AT5G13640 991 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10043361 [exp] 165 / 6e-48 AT5G13640 85 / 4e-20 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10024927 [exp] 76 / 6e-14 AT1G04010 1021 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10008234 [exp] 74 / 2e-13 AT1G04010 991 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10003615 [exp] 74 / 2e-13 AT1G04010 1005 / 0.0 phospholipid sterol acyl transferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G190100 [exp] 917 / 0 AT3G44830 911 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Potri.003G063100 [exp] 806 / 0 AT5G13640 1077 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.001G171000 [exp] 790 / 0 AT5G13640 1055 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.009G150800 [exp] 249 / 3e-79 AT3G44830 204 / 9e-63 Lecithin:cholesterol acyltransferase family protein (.1) Potri.014G195500 [exp] 80 / 2e-15 AT1G04010 1040 / 0.0 phospholipid sterol acyl transferase 1 (.1) Potri.015G121000 [exp] 56 / 1e-07 AT4G19860 781 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G014400 [exp] 55 / 1e-07 AT1G27480 535 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G121596 [exp] 54 / 2e-07 AT4G19860 756 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G076300 [exp] 49 / 6e-06 AT3G03310 632 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02450 [flax] [poplar] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10019519 pacid=23181523 polypeptide=Lus10019519 locus=Lus10019519.g ID=Lus10019519.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCAGTTCTCAGGTTTCGAAAGCTCTGCTTTCTGGAGCCCACTTTCGACACAACCCCGACCAACAAGCTTGAACCCAACAAGGAAACGGCCG CCCCCGCTGTTATTCTTCCCCGGCCGAAAAGAAAGGCAGCGCCGTCGGCAGGGAAGGAAAAATGGAGGTGCTTGGACAACTGTTGCTGGACAATCGGATG TCTTTGCACTACTTGGTGGCTTTGTTTATTCCTCTTCAACTGTTTCCCATCCGGCTTCCAGCTCCCCCGTCCTGAATCCCCTGGAATCCGGCTCAAACGA GAGGGACTAACCCCGCTTCACCCCGTTGTCATGGTCCCCGGAATCGTCACCGGCGGTCTTGAGCTCTGGGAAGGTAAAGCTTGTGCTAAGGATCTTTTCC GGAAGCGACTTTGGGGCGGCACCTTCACCGATGTTCTCACTCGGCCGTTGTGCTGGTTGGAGCATCTTTCTTTGGACAACAAAACCGGTCTCGACCCGCC TGGGATCCGAGTCCGAGCCGTCACCGGTCTGGTTGCCGCCGACTATTTCGCTCCGGGGTACTTCGTATGGGCGGTTCTCATCGAGAATTTGGCCAAAATT GGATACGAAGGCAAGAACTTGCACATGGCCGCTTACGATTGGCGCCTCTCTTTCCACAACACTGAGATTCGGGACCAGTCGCTGAGCCGATTGAAAAGCA AGATAGAGCTACTGTATGCGAGCAACGGCAATAAGAAAGTAGTGGTGGTTCCACACTCCATGGGTGGCGTCTATTTCCTCCATTTCCTTAAATGGGTCGA AACTCCGACACCCATCGGCGGCGGCGGCGGTCCAGACTGGTGTTCCAAGCACATCAAGGCTGTTATGAACATCGGTCCTGCATTTCTCGGCGTCCCAAAG ACCGTCAGCAACTTCTTCTCTGCAGAGGCCAAGGACGTAGCTTTGATCAGAGCTATGGATCCTGGTTTGTTGGACTCGGAGATGCTTGGACTTCAGACGC TGGAGCATGTGTTGAAGGTGAGTAGAACTTGGGATTCAGTTGTTTCTTTGCTTCCTAAAGGAGGAGAGGCTATCTGGGGTGATCTGGACTGGTCTCCTGA AGATGGCTATGCTTCGTGTGGTGATTTGTTAAAGCGCAAGTCGTTGCAATCTCCGGTGGCAGTTGTTGCTGACCAAAACTCGACTAATGGTGGTGATGCA ACTACATTCCTTCTTAAAGAACCGATTAAGTACGGAAGGTTGATCTCCTTTGGCAAGGCTGCATCGGAGTTGCCATCGTCGTTGCTGTCATCCCTCGATC AGAAGGATCTAATACTTTCAGAGACTAAGAACAATGCAACCTTGTCATGCAAGGACATCAAGACTGAATATGATGAGATGAACAGAGAAAGCATTCCAAA GATTGCGGAGAACAAAGCATACACAGCTACAACAGTTCTCGATCTCCTGAGGGTTGTGGCTCCAAAGACAATGAAACGAGCTGAAGCACATTTCTCTCAT GGCATAGCTGATAACCTCGACGATCCGAAATATGCACATTACAAGTACTGGTCCAACCCACTCGAGACAAAATTACCCGATGCACCAGATATGGAGATCT ACTGCTTATATGGGGTAGGAATTCCCACAGAGAGATCATACGTCTACAAGATGTCTCCAAACACCAGGTGTAATAGCATTCCATTTCGGATCGACAGCTC CGTGGATGGAGATGATGGTGAGAGTTGCCTTAGAGGTGGAGTGTATCATGTCGATGGCGATGAGAGTGTGCCGGTGTTAAGTGCAGGATTCATGTGTGCT AAAGGATGGAAAGGGAGAACAAGATTCAACCCGTCCGGGATCTCGACTTATGTGAGGGAGTACCGGCACAAGCCCCCAGCTAGCCTACTTGAAGGCCGGG GTGCCGAGAGTGGGGCACATGTTGACATAATGGGTAATGTTGGTTTGATAGAAGATGTTATGAGAGTTGCAGCTGGCGCCACTGGTTCTGAGATCGGTGG TGACCGGATTCATTCCGACATTCTAAGAATGTCGGACCGGATTAACATCCCACTGTGA
AA sequence Show only first row Show all	>Lus10019519 pacid=23181523 polypeptide=Lus10019519 locus=Lus10019519.g ID=Lus10019519.BGIv1.0 annot-version=v1.0 MAASVLRFRKLCFLEPTFDTTPTNKLEPNKETAAPAVILPRPKRKAAPSAGKEKWRCLDNCCWTIGCLCTTWWLCLFLFNCFPSGFQLPRPESPGIRLKR EGLTPLHPVVMVPGIVTGGLELWEGKACAKDLFRKRLWGGTFTDVLTRPLCWLEHLSLDNKTGLDPPGIRVRAVTGLVAADYFAPGYFVWAVLIENLAKI GYEGKNLHMAAYDWRLSFHNTEIRDQSLSRLKSKIELLYASNGNKKVVVVPHSMGGVYFLHFLKWVETPTPIGGGGGPDWCSKHIKAVMNIGPAFLGVPK TVSNFFSAEAKDVALIRAMDPGLLDSEMLGLQTLEHVLKVSRTWDSVVSLLPKGGEAIWGDLDWSPEDGYASCGDLLKRKSLQSPVAVVADQNSTNGGDA TTFLLKEPIKYGRLISFGKAASELPSSLLSSLDQKDLILSETKNNATLSCKDIKTEYDEMNRESIPKIAENKAYTATTVLDLLRVVAPKTMKRAEAHFSH GIADNLDDPKYAHYKYWSNPLETKLPDAPDMEIYCLYGVGIPTERSYVYKMSPNTRCNSIPFRIDSSVDGDDGESCLRGGVYHVDGDESVPVLSAGFMCA KGWKGRTRFNPSGISTYVREYRHKPPASLLEGRGAESGAHVDIMGNVGLIEDVMRVAAGATGSEIGGDRIHSDILRMSDRINIPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44830			Lecithin:cholesterol acyltrans...		Lus10019519 [exp]	0	1
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Lus10024320 [exp]	2.0	0.8485
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10039650 [exp]	9.3	0.8548
AT1G13340			Regulator of Vps4 activity in ...		Lus10033553 [exp]	11.6	0.8061
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10011730 [exp]	22.4	0.8410
AT5G62960			unknown protein		Lus10002386 [exp]	26.7	0.8226
AT1G04650			unknown protein		Lus10011755 [exp]	27.9	0.8410
					Lus10002303 [exp]	29.4	0.7416
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10004008 [exp]	30.8	0.8334
AT1G58060			RNA helicase family protein (....		Lus10012695 [exp]	34.3	0.7353
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Lus10035382 [exp]	34.7	0.8332

Compare expression of checked genes

Lus10019519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.