Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37860 269 / 4e-87 LCD1 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) AT5G22790 201 / 8e-61 RER1 reticulata-related 1 (.1) AT3G08630 76 / 3e-15 Protein of unknown function (DUF3411) (.1) AT3G08640 74 / 1e-14 Protein of unknown function (DUF3411) (.1) AT5G12470 68 / 2e-12 Protein of unknown function (DUF3411) (.1) AT2G40400 62 / 2e-10 Protein of unknown function (DUF399 and DUF3411) (.1), Protein of unknown function (DUF399 and DUF3411) (.2) AT3G56140 60 / 1e-09 Protein of unknown function (DUF399 and DUF3411) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043364 [exp] 319 / 4e-107 AT5G22790 428 / 1e-148 reticulata-related 1 (.1) Lus10024346 [exp] 182 / 2e-55 AT2G37860 415 / 7e-146 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10012657 [exp] 180 / 5e-54 AT2G37860 414 / 1e-144 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10035607 [exp] 77 / 3e-16 AT3G08640 330 / 2e-114 Protein of unknown function (DUF3411) (.1) Lus10003242 [exp] 76 / 7e-15 AT3G08640 372 / 6e-127 Protein of unknown function (DUF3411) (.1) Lus10003180 [exp] 73 / 4e-14 AT5G12470 457 / 6e-161 Protein of unknown function (DUF3411) (.1) Lus10009956 [exp] 72 / 1e-13 AT5G12470 459 / 8e-162 Protein of unknown function (DUF3411) (.1) Lus10019744 [exp] 71 / 3e-13 AT5G12470 452 / 1e-159 Protein of unknown function (DUF3411) (.1) Lus10016379 [exp] 71 / 4e-13 AT5G12470 451 / 1e-158 Protein of unknown function (DUF3411) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G150400 [exp] 214 / 6e-66 AT5G22790 518 / 0.0 reticulata-related 1 (.1) Potri.016G103100 [exp] 209 / 8e-64 AT2G37860 510 / 2e-180 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Potri.016G140700 [exp] 75 / 8e-15 AT3G08640 357 / 5e-123 Protein of unknown function (DUF3411) (.1) Potri.001G262200 [exp] 74 / 2e-14 AT5G12470 471 / 1e-166 Protein of unknown function (DUF3411) (.1) Potri.006G111300 [exp] 70 / 3e-13 AT3G08640 349 / 8e-120 Protein of unknown function (DUF3411) (.1) Potri.001G256300 [exp] 69 / 6e-13 AT5G12470 443 / 3e-155 Protein of unknown function (DUF3411) (.1) Potri.009G051800 [exp] 69 / 1e-12 AT5G12470 467 / 1e-164 Protein of unknown function (DUF3411) (.1) Potri.008G074300 [exp] 57 / 1e-08 AT3G56140 968 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11891 [flax] [poplar] RETICULATA-like Protein RETICULATA-related
Representative CDS sequence Show only first row Show all	>Lus10019521 pacid=23181623 polypeptide=Lus10019521 locus=Lus10019521.g ID=Lus10019521.BGIv1.0 annot-version=v1.0 ATGGCGATTCCTTCGTCGTCCGCCGGCCGCTTCCGACTCTCATTCGTCGACAACTCCGCTCCCCTCAACCAATGCACAGCCCCCATGCTCGATGCTAGGA TATTTTCTCAGCAGATGCCGTCAATCAATCTCAAAATCAAGCTACCAGCGTCTCAGTGGCAGTGTTCCTCTGTCAGCTTCCGCCGTGGAATCAATTGCGC GAAATCGGAGTTCGAGGCTAATTCGATTAAGGACTCGTTGACAAGTGACGTTTCTCGACTTGATGACGGCGGCCGCGGTGATGGATTTGGAGGAAGCGGA GGGTCTCCTGGCGGTGGTGATGGTTTTGGAGGAAACGGAGGGTCTCCTGGCGGCGGTGATGGCGATAATGGGGAGGAGGATGAGTTTGGACCGATGTTGA AATTCGATGATGTAATCAGAGAAACGAATGCGCGCGGAGCGAAACTTCCCGCCGATATGTTGGCAGCTGCTGAGACTACTGGAATCAGGGAGAAGTTTCT CCTTCGATACCTGGAATTGCAGGATGCAGGTTGGCCGCTGGGGTTCTTAATGAACCATTTTTCCATGCTGCGGAATCGAATGATGGCTGATCCTGATTTC CTCTTCAAAGTTGGAACCGAGGTAGTTATCGATTCTTGTTGTGCAACGTTTGCTGAAGTATTTACAACTCCAATGTGTAGTTACAGCTTCAAAGTCGCTT GCTTTCAGCATTTACCCATCGGCGTACTGTATGGTTCAGTTGGATTTGGGTGTGGACTAATCGGACAGGGCATTGCTAATATGATCATGAATGCCAAGAG GAGCGTGAAGAAGTCAGAAGAGGACATTCCTATTCCGCCTCTACTCAAAAGTGCAGCCCTTTGGGGTGTATTCCTGGCTGTATCTTCAAACACTCGGTAC CAGATCATCAACGGGCTAGAACAAGTGGTGGAAGCATCGGCTTTGGCGAGGCAAGTCCCTCCGCTGTCAAAGGCATTCACCGTTGGGGTGAGATTCGCCA ACAATATATACGGAGGGATGCAGTTTGTGGACTGGGCAAAACTGAGCGGAGTTCAGTAA
AA sequence Show only first row Show all	>Lus10019521 pacid=23181623 polypeptide=Lus10019521 locus=Lus10019521.g ID=Lus10019521.BGIv1.0 annot-version=v1.0 MAIPSSSAGRFRLSFVDNSAPLNQCTAPMLDARIFSQQMPSINLKIKLPASQWQCSSVSFRRGINCAKSEFEANSIKDSLTSDVSRLDDGGRGDGFGGSG GSPGGGDGFGGNGGSPGGGDGDNGEEDEFGPMLKFDDVIRETNARGAKLPADMLAAAETTGIREKFLLRYLELQDAGWPLGFLMNHFSMLRNRMMADPDF LFKVGTEVVIDSCCATFAEVFTTPMCSYSFKVACFQHLPIGVLYGSVGFGCGLIGQGIANMIMNAKRSVKKSEEDIPIPPLLKSAALWGVFLAVSSNTRY QIINGLEQVVEASALARQVPPLSKAFTVGVRFANNIYGGMQFVDWAKLSGVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Lus10019521 [exp]	0	1
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10025817 [exp]	8.8	0.7253
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001697 [exp]	32.2	0.7123
AT5G51410			LUC7 N_terminus domain-contain...		Lus10038924 [exp]	41.6	0.6878
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10003799 [exp]	46.7	0.7075
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10011900 [exp]	53.2	0.6836
AT2G23060			Acyl-CoA N-acyltransferases (N...		Lus10002468 [exp]	56.6	0.6473
AT4G20040			Pectin lyase-like superfamily ...		Lus10038369 [exp]	65.9	0.6933
AT1G64300			Protein kinase family protein ...		Lus10036439 [exp]	74.9	0.6576
AT3G06240			F-box family protein (.1)		Lus10013873 [exp]	75.6	0.6836
AT1G21710		OGG1, ATOGG1	ARABIDOPSIS 8-OXOGUANINE-DNA G...		Lus10028539 [exp]	86.6	0.6805

Compare expression of checked genes

Lus10019521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.