Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44820 753 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G30440 531 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G03250 422 / 8e-141 Phototropic-responsive NPH3 family protein (.1) AT5G13600 406 / 2e-134 Phototropic-responsive NPH3 family protein (.1) AT5G66560 382 / 3e-124 Phototropic-responsive NPH3 family protein (.1) AT5G64330 366 / 4e-117 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT5G48800 348 / 1e-111 Phototropic-responsive NPH3 family protein (.1) AT3G50840 347 / 1e-111 Phototropic-responsive NPH3 family protein (.1) AT3G08660 308 / 1e-96 Phototropic-responsive NPH3 family protein (.1) AT3G08570 307 / 5e-96 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038531 [exp] 518 / 4e-177 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 513 / 2e-175 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 421 / 3e-139 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 415 / 2e-137 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 415 / 9e-137 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10037432 [exp] 409 / 8e-135 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 407 / 2e-134 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 405 / 4e-133 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 402 / 8e-132 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G150500 [exp] 920 / 0 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 892 / 0 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 536 / 0 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 528 / 0 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 441 / 2e-147 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G038600 [exp] 441 / 2e-147 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 437 / 5e-146 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G033900 [exp] 419 / 8e-139 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G130700 [exp] 402 / 9e-132 AT5G66560 733 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 388 / 3e-126 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10019522 pacid=23181535 polypeptide=Lus10019522 locus=Lus10019522.g ID=Lus10019522.BGIv1.0 annot-version=v1.0 ATGCACGCGTCGAGGAATGATGAACAACGTGAGCTGCGGGGGTTCTGCGATGCTGGGTTGCCCACTGATATAACCATTACTGTAGGTGGAGTCAAGTTCC ATCTTCATAAGTTTCCTCTGGTATCAAAAAGTGGCAAGATTGCTCGTATCTGTGAAGGATCCCCTGAAAAGGATTTGAGCATAGAACTTGAAGATTTCCC TGGAGGTCCAGATGCATTCTTGATCGCTGTCAAGTTTTGTTACGGCATGCGAGTGGAGCTGACGCCAAGAAACATCGTAATGGTGTATTGTGCAGCCGAC TACCTGGAAATGACAGATGAGCTTGGAGATGGCAACTTGGTGTCGAAATCAGAGACCTTTTTGCACAAGAATGTACTTCAGAACTGGAAAGACTGCATCT TGGCTCTCCGAAGTTGCGATCCAATTCTGCAAAAGGCTGAAGAGAAACTCAACATCATAACCAAATGCTTGAACGCTGTATCTTTGATGGCTTCCACGGA CCCTAGTTTATTTGGATGGCCTATGATGATGTACGGTAGACTGCAAAGTCCTGGTGGTAGTATCTTGTGGAACGGAATCAACACTGGAGCAAGGATCAGG AGCACCGAATCTTCCGACTGGTGGTTTGAAGATGTTTCATACTTAAACGTGAGTTTGTTTGCAAGACTAATCAAAACGATGGAAGTTAGAGGTATACGAC CTGAGAATCTTGCTGGTGCCATAATGTATTATGCCAGGAAGTATCTACCTGGTCTCGGTCGGTGGCAGACTGGAAAAATTAGCAAAACTAGAACTGTAAC AAGTTTTAGTAGCTTGACAGTACCTGCTATTGTCGACGAAAAGGACTTACTGGAGACGGTTGAAAAGCTTCTCCCGGAAAGGAAAGGGAAATCCTTTTGC CGGTTTTTGTTGGGACTGCTTCGAGTTGCTTTGATATTAGGTGTCAGTCAGACATGCATTGAATCTCTGGAGAGGAGAATAGGAAGGCAGTTGGAGTTAG CATCTTTGGATGTTCTTCTTATTCCTAATTATTCAGATTCTGATAGTACTCTATATAATACCGACTGCATAGACCGTGTTCTTCATCACTTTATTATGTC TTCAGAATCGGGGATAACAAAACCTTTCTCTCCAGCATCGTTAACAACATCACCTTCTTCTGAACCATTGAGGAAAGCTGCAAAGTTGATGGACAATTAT CTTGCAGAAGTTGCTTCTGATGTCAACTTGAAACCTGCGAAGATCCGTTCGCTTGCTGAAGCGCTTCCAGATTCCTCCAGGACGTTCCATGATGGACTGT ACCGAGCATTGGACATATATTTCAAGGCACATCCATGGCTCTCTGAGAAAGAAAAGGAGGAACTATGCAACATCATTGACTACCAGAAACTCTCCATTGA TGCATGTGCTCATGCTTCGCAGAACGACCGGTTACCACTTAGGATAGTTCTTCAAGTACTTTTCTTTGAGCAGATGCAATTGAGAAAAGCTCTTGCTGAG TGTCTTAATGTCTTTGATTCAGAAAGTGGGCCTCCTCCTGCTATCACGCTCCCAACAGACATTACTGGACATACTATAGTACAGAGAGATAGCGGGTGGG TAACCATGCTACGAGAGAACCAGGTACTGAAGTTAGACTTGGAAAAAATGAGGTCTAGAGTTGGGGAACTTGAAGAAGAATTCAACAGTATAAAGCAGCA AATGAGGAAGGTGACCAAATCACATAGCTCTCTCAGCTCCCCTCGATTGTTTGCTAGGCGAATCGGATGTAATAAGCTCCTTCCTGAACCTTCAGATGCA CAACCAGCTCCTGCTGATCATAGCAATGGCCACACACCAAGAGCATCGGTAGAGCAACCGCGTTCGTCCCGTCATTTTCCCAAGCACAGGAAGAGCTTCT CCATGGTCTGA
AA sequence Show only first row Show all	>Lus10019522 pacid=23181535 polypeptide=Lus10019522 locus=Lus10019522.g ID=Lus10019522.BGIv1.0 annot-version=v1.0 MHASRNDEQRELRGFCDAGLPTDITITVGGVKFHLHKFPLVSKSGKIARICEGSPEKDLSIELEDFPGGPDAFLIAVKFCYGMRVELTPRNIVMVYCAAD YLEMTDELGDGNLVSKSETFLHKNVLQNWKDCILALRSCDPILQKAEEKLNIITKCLNAVSLMASTDPSLFGWPMMMYGRLQSPGGSILWNGINTGARIR STESSDWWFEDVSYLNVSLFARLIKTMEVRGIRPENLAGAIMYYARKYLPGLGRWQTGKISKTRTVTSFSSLTVPAIVDEKDLLETVEKLLPERKGKSFC RFLLGLLRVALILGVSQTCIESLERRIGRQLELASLDVLLIPNYSDSDSTLYNTDCIDRVLHHFIMSSESGITKPFSPASLTTSPSSEPLRKAAKLMDNY LAEVASDVNLKPAKIRSLAEALPDSSRTFHDGLYRALDIYFKAHPWLSEKEKEELCNIIDYQKLSIDACAHASQNDRLPLRIVLQVLFFEQMQLRKALAE CLNVFDSESGPPPAITLPTDITGHTIVQRDSGWVTMLRENQVLKLDLEKMRSRVGELEEEFNSIKQQMRKVTKSHSSLSSPRLFARRIGCNKLLPEPSDA QPAPADHSNGHTPRASVEQPRSSRHFPKHRKSFSMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44820			Phototropic-responsive NPH3 fa...		Lus10019522 [exp]	0	1
AT1G13570			F-box/RNI-like superfamily pro...		Lus10034415 [exp]	1.7	0.8659
AT3G48040		ROP10, ARAC8, A...	Arabidopsis RAC-like 8, RHO-re...		Lus10034876 [exp]	2.2	0.8543
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10041446 [exp]	3.3	0.8826
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009228 [exp]	4.0	0.8409
AT1G25375			Metallo-hydrolase/oxidoreducta...		Lus10005109 [exp]	5.5	0.8164
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10042942 [exp]	6.3	0.8091
AT5G54380		THE1	THESEUS1, protein kinase famil...		Lus10037887 [exp]	6.3	0.8390
AT3G59350			Protein kinase superfamily pro...		Lus10026708 [exp]	8.1	0.8207
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10012027 [exp]	9.2	0.8118
AT1G55270			Galactose oxidase/kelch repeat...		Lus10019425 [exp]	9.6	0.8052

Compare expression of checked genes

Lus10019522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.