Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22750 258 / 2e-79 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT5G43530 201 / 1e-58 Helicase protein with RING/U-box domain (.1) AT1G02670 129 / 5e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G05120 129 / 9e-34 Helicase protein with RING/U-box domain (.1) AT1G61140 124 / 4e-32 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT1G50410 120 / 5e-31 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT3G20010 120 / 8e-31 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G11100 115 / 7e-29 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT5G05130 100 / 1e-23 DNA/RNA helicase protein (.1) AT2G02090 93 / 2e-21 CHA19, ETL1, CHR19 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041156 [exp] 180 / 1e-51 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10030044 [exp] 129 / 1e-33 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10011211 [exp] 124 / 6e-32 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10018465 [exp] 123 / 1e-31 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10041008 [exp] 117 / 1e-29 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10027296 [exp] 108 / 3e-27 AT5G05130 470 / 1e-159 DNA/RNA helicase protein (.1) Lus10013452 [exp] 109 / 6e-27 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10039001 [exp] 108 / 9e-27 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10013792 [exp] 92 / 7e-21 AT2G02090 1034 / 0.0 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G189400 [exp] 266 / 2e-82 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.003G083400 [exp] 196 / 2e-57 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.014G154600 [exp] 127 / 3e-33 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.011G046400 [exp] 121 / 3e-31 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.004G037700 [exp] 119 / 3e-30 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.007G000700 [exp] 117 / 8e-30 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.010G099000 [exp] 97 / 9e-23 AT2G02090 1061 / 0.0 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.006G035700 [exp] 97 / 1e-22 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033700 [exp] 94 / 9e-22 AT5G05130 710 / 0.0 DNA/RNA helicase protein (.1) Potri.016G034000 [exp] 94 / 2e-21 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019523 pacid=23181530 polypeptide=Lus10019523 locus=Lus10019523.g ID=Lus10019523.BGIv1.0 annot-version=v1.0 ATGACCAAGATGTTCCTTCAGTGGCATATATCCAAGAAGTTGTGGACGAACTCCAGAAGGAAGAACAAGGAGAGTGTCCAATCTGTCTTGAAGCTTTTGA AGATGGGGAAAGTCGTAACAAAGCAAGAGCTTATTACTGCTCCCACCGACAGTCGCTTTCAGATTGATGTTGAGAGAAATCGGATTGAATCGTCCAAAGT TGTTGCTCTCTTGAGAGAACTTGAAATTCTTCGTGCATCAGGCTCTAAAAGCATCATTTTCAGTCAGTGGACTGCCTTTCTGGATCTATTACAAATCGCA TGGTGTTTAGGCAAGGGGATGGAAATTGATGGCCTGATTTCCGAAGCTAGATTATTCATAAATAACATTTCTTTCCTGCGCCTTGATGGTACCCTATATC AAGGGCAGCGTGAAAAAGTGCTGCTAATGTCATTGAAAGCTGGAGGGGTAGGGATCAATCTAACTGCAGCTGCCAATGCCTTTGCTATGGATCCATGGTG GAATCCAGCAGTTGAGGAGCAAGCTGTCATGCGCATTCATCGCATTGGACAAACTAAACCAGTAATGATCAAGCGCTTCATTGTTAAGCGGACAGTTGAG GAAAGAATGGTGGCAGTACAAGCACGCAAGCATTGGATGATATCTGGTGCATTGACTAACCAAAGGTTGCAGGTCAACTCCTTCAACTTCAGTACTAAGA TCTCGGAAACTTTCACCAGACTACGTAAAAAGCAACTTCAACTCTTCGATTGA
AA sequence Show only first row Show all	>Lus10019523 pacid=23181530 polypeptide=Lus10019523 locus=Lus10019523.g ID=Lus10019523.BGIv1.0 annot-version=v1.0 MTKMFLQWHISKKLWTNSRRKNKESVQSVLKLLKMGKVVTKQELITAPTDSRFQIDVERNRIESSKVVALLRELEILRASGSKSIIFSQWTAFLDLLQIA WCLGKGMEIDGLISEARLFINNISFLRLDGTLYQGQREKVLLMSLKAGGVGINLTAAANAFAMDPWWNPAVEEQAVMRIHRIGQTKPVMIKRFIVKRTVE ERMVAVQARKHWMISGALTNQRLQVNSFNFSTKISETFTRLRKKQLQLFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22750		RAD5A, RAD5	DNA/RNA helicase protein (.1)		Lus10019523 [exp]	0	1
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10023096 [exp]	8.5	0.7782
					Lus10017803 [exp]	11.0	0.8079
					Lus10019564 [exp]	18.7	0.7963
AT5G02910			F-box/RNI-like superfamily pro...		Lus10034290 [exp]	20.0	0.6703
					Lus10002411 [exp]	22.8	0.7955
AT5G13825			unknown protein		Lus10000042 [exp]	26.2	0.7944
AT5G47180			Plant VAMP (vesicle-associated...		Lus10000591 [exp]	27.6	0.7809
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002774 [exp]	31.6	0.7826
					Lus10010397 [exp]	32.8	0.7849
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10029556 [exp]	33.4	0.5976

Compare expression of checked genes

Lus10019523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.