Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54980 716 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G39230 701 / 0 LOJ LATERAL ORGAN JUNCTION (.1) AT5G59900 340 / 4e-103 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 316 / 1e-92 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 303 / 6e-92 RPF2 rna processing factor 2 (.1) AT1G62930 293 / 2e-88 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 291 / 1e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 295 / 5e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 288 / 1e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 292 / 3e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043366 [exp] 444 / 2e-149 AT3G54980 290 / 2e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 349 / 1e-106 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 346 / 2e-105 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010407 [exp] 337 / 5e-102 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 317 / 3e-95 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 313 / 1e-92 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026206 [exp] 310 / 1e-90 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043417 [exp] 293 / 4e-86 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038974 [exp] 290 / 4e-86 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250700 [exp] 958 / 0 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 381 / 2e-117 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 346 / 4e-105 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 342 / 5e-104 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 310 / 4e-94 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 301 / 7e-91 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G249800 [exp] 304 / 2e-90 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G105700 [exp] 302 / 1e-89 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G276500 [exp] 296 / 1e-88 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G043101 [exp] 302 / 2e-88 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019524 pacid=23181609 polypeptide=Lus10019524 locus=Lus10019524.g ID=Lus10019524.BGIv1.0 annot-version=v1.0 ATGGCTTCCCCTAGTATTTCTCCCTTGATTCCTAGGTTCAACTTAAGAAACCCTAGATTTCTCCATTGGCAAGCTGGACTCAGCGTTAATCATTTCTCTG ATTCTGCTTCTTCTCCACGGTATCACAACTCAAACTCAGATTGCCCTCTGGAAATTCCGCCCGAAACCTCAACTTCAGAGTTCAAAGACTCTGTCTTGGC ATCAGCTGACGTGATAACCAGCCTTCTCAGTCGTAAAAATGATCCCAGTTCAGCTCTGGACTACTTCCAGTGGGCGGAAAGGAGACGCGGGGCCGTTAGA ACCATTGATTCGCTATGCATCCTCTTCCACATTTTGACGGCAGAGCCGGAGACTCGTCGACGAGCGCAATACGAGTTCAATCATTTTGCTTCAGGCGATT CAGGTTACACTCCCAGTATTGTTGTTCATCACCTGTTTCAGTGTTTAGATAATTACGGCCTTGAACGAGATTCTAGAGTTTTCGATTTCTTGTTGAATGG TTATGTTAGAGCCAAAAGGCTAAGTAATGCCATAGAATGTTTTAAGTCAATGGTGGATCAGGGCATTCTTCCCTCTCTGCCTTTTGTGAACATAGTCTTA CGTGAATTGGTTAAAAGTCATATGTTCGCTGAAGCTCAAGACCTCTACAGTAAGATGGTTGAGACAGACGCGAAAGGGGATGGTGTAACAGTTAAAATTA TGATGCGTAGCTACGTGAAGCAAGGGAGAGACGCTGAAGCTAACGAGTTGTTTTTTAAGGCAAAAAACACAGGGATTGAACTTGATGCTGTGGCTTACAC CATCCTCATTCAAGCTGTTTGCAGGATGCTTGATGGTAACTTAGCTTATCAATTGTTGAGAGAGATGAAAAAAAAGGGATGGGTTCCATCTGAGTGCACC TTTACTACTGTCATTGGGGCTTGCATGAAGCTGGGGAATATGGCTGAAGCTCTTAGGCTTAAGGATGAGATGATGAATTGTGGAAAACCGGTGAACGTGG TGGTGTTTACCAGTTTGATTAAAGGTTATTGTAAGCAAGGCTATCTGGACAGAGCCTTGGAACTCTTTTATCAAATGGGTGAGTCGGGAAACGTCCCCCC AGACAGAGTCACATACTCGATTTTGATCGACTGGTGCTGTAAGAATGGGAATATGAATAAAGCTTGTGAACTATATGGACAAATGAAGAAGAAAGGTATC CGGACTAGTGTATTCATTGTGAATTGCTTGTTACAAGGACTCCTGAAGGCACAGGATCTTGAAGAAGCAAACAAGTTATTTGATAAGGCAATTGAAAATG AAATTGCTGATGTCAGCAGCTATAATTCTTTCCTGTCATTCTTCTGCAATGAGGGCAAGGTAGACGAAGCACAACATGTATGGGAAAAGATGTTAAGAAA AGGTGTCAAACCTACCATTGTTTCTTACAACAATATGATTCTTGGCTACTGTAGACAAGGCAACTTAGATTTGGCAGGTAGTCTATTGTCCCAGCTCAAG GACCTGGGTCTCAAACCTAATGTGTTCACTCACACAATTTTGATAGATGGCTGTTTTAAGAAAGGTGACAGTGAAAGTGCCTTCAGCGTGTTTGAAAAGA TGGCTGGGGAGAACATTCTACCCTCAGATTATACGTACAATAGTGTAATTAACGGGATGTGCAAAGCTGGTCGAACATCTGAAGTACAAGAGATGTTGAG GAAGTTTACAGAGCACGATTTCACTCCTTCAGCTCTCACATATAACATCATTATTGATGGTTTTGTTAAAGAAGGCTCTCTCAGTTCTGCTTTGGGAGTT TACAAAACGATGCATGAAGGTGGAATTCATCCAACTATCATAACTTATTCTACTTTGATTAATGGCTTGTGTAAAAGCAATAATTTAGATCTTGCTTTGC GGATGTTGGATGATGTTAAAAGCAAAGGACTTCAATTGGATGTTACCTTATACAGTACTCTGATAGATGGATTTTGCAAAAAAGGGGACATGGAACTTGC ATGGCAGTTTTTCTGTGAACTCCTTGATGTTGGGCTATCGCCGAATACTGTTGTCTACAATAGCTTGATAAGTGGCTTTAGGAATGATGACAATGTGGAG GCTGCACTCAAGTTGTATATGAGAATGCAAGCTGGGGGAGTTCCTTGTGATCTGCAAACTTTCACTACTCTAATTGATGGTCTGCTAAAGGCAGGTCAAG TGCTTCCTGCAACTGATCTCTACTCAAAGATGCTTGCCAAAGGCATCGTTCCTGATATCATAACATATGGTGTCCTTATAAATGGTCTTTGTAAACAAGG GAAGATAGACAATGCTCTAAAAATTCTGGAAGAAATGGATAAAAAAAGCATGCCTCCAAACGTTCTCATTTACAATACCCTAATCGCCGGACACTTTAGA GAGGGGAATCTGCAGGAGGCTTTTAGACTGCATAACGAGATGCTTGACAGGGGTCTTATTCCAGATGATGCAACTTATGATATGCTTGTGAGTGGAAAAG TGAAGGGACAACGTTCCACATCTAATTGCAAGTAA
AA sequence Show only first row Show all	>Lus10019524 pacid=23181609 polypeptide=Lus10019524 locus=Lus10019524.g ID=Lus10019524.BGIv1.0 annot-version=v1.0 MASPSISPLIPRFNLRNPRFLHWQAGLSVNHFSDSASSPRYHNSNSDCPLEIPPETSTSEFKDSVLASADVITSLLSRKNDPSSALDYFQWAERRRGAVR TIDSLCILFHILTAEPETRRRAQYEFNHFASGDSGYTPSIVVHHLFQCLDNYGLERDSRVFDFLLNGYVRAKRLSNAIECFKSMVDQGILPSLPFVNIVL RELVKSHMFAEAQDLYSKMVETDAKGDGVTVKIMMRSYVKQGRDAEANELFFKAKNTGIELDAVAYTILIQAVCRMLDGNLAYQLLREMKKKGWVPSECT FTTVIGACMKLGNMAEALRLKDEMMNCGKPVNVVVFTSLIKGYCKQGYLDRALELFYQMGESGNVPPDRVTYSILIDWCCKNGNMNKACELYGQMKKKGI RTSVFIVNCLLQGLLKAQDLEEANKLFDKAIENEIADVSSYNSFLSFFCNEGKVDEAQHVWEKMLRKGVKPTIVSYNNMILGYCRQGNLDLAGSLLSQLK DLGLKPNVFTHTILIDGCFKKGDSESAFSVFEKMAGENILPSDYTYNSVINGMCKAGRTSEVQEMLRKFTEHDFTPSALTYNIIIDGFVKEGSLSSALGV YKTMHEGGIHPTIITYSTLINGLCKSNNLDLALRMLDDVKSKGLQLDVTLYSTLIDGFCKKGDMELAWQFFCELLDVGLSPNTVVYNSLISGFRNDDNVE AALKLYMRMQAGGVPCDLQTFTTLIDGLLKAGQVLPATDLYSKMLAKGIVPDIITYGVLINGLCKQGKIDNALKILEEMDKKSMPPNVLIYNTLIAGHFR EGNLQEAFRLHNEMLDRGLIPDDATYDMLVSGKVKGQRSTSNCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	0	1
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10019119 [exp]	1.0	0.9361
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10041229 [exp]	1.4	0.9259
AT5G64150			RNA methyltransferase family p...		Lus10015342 [exp]	2.0	0.9199
AT3G21480			BRCT domain-containing DNA rep...		Lus10038633 [exp]	3.0	0.9202
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10037812 [exp]	3.9	0.9177
AT1G73020			unknown protein		Lus10009732 [exp]	4.9	0.9065
AT2G26590		RPN13	regulatory particle non-ATPase...		Lus10040571 [exp]	5.3	0.8902
					Lus10005904 [exp]	6.0	0.8821
AT5G14520			pescadillo-related (.1)		Lus10001362 [exp]	6.5	0.9033
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Lus10030622 [exp]	7.2	0.8909

Compare expression of checked genes

Lus10019524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.