Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 609 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 571 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 570 / 0 EFR EF-TU receptor (.1) AT3G47110 569 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 558 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 445 / 3e-140 Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 439 / 3e-135 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 437 / 9e-135 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G46330 428 / 6e-132 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G28490 419 / 2e-130 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043368 [exp] 1825 / 0 AT3G47570 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10009394 [exp] 1111 / 0 AT3G47570 642 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 647 / 0 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 642 / 0 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 641 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035429 [exp] 639 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 634 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 633 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 630 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037400 [exp] 949 / 0 AT3G47570 622 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G060100 [exp] 928 / 0 AT3G47570 670 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 671 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 657 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 649 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 646 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 642 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G152500 [exp] 640 / 0 AT3G47570 753 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 639 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 638 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019525 pacid=23181533 polypeptide=Lus10019525 locus=Lus10019525.g ID=Lus10019525.BGIv1.0 annot-version=v1.0 ATGAACTCTACATCCACGGGAGTCCCCGCCGTCTATCTCTGTCTCTTCTTCCTCTGTTTCTTTCTCGAGGTGGCATTCGTTGACTCAACGGCTGCTTTGA CCAGTATTGACACAGACAGAGAAGCCTTGCTTGCATTCAGGTCTCAGGTAGTATCCTCTCAATTCCCTCATGTTTTAGCTTCTTGGCATGACGACCAAAC TTCATCCTCCTCTCCATGTAATTGGACCGGAGTTTCCTGCGACGACAGTGGGAAGAACCGCGTTGTGGCACTTGCTCTTCCCAGTTTGGGACTGGTTGGG TCCATCACAACTTTCATAGGCAACCTGTCGATGCTTCAGTCGCTGGAACTTCAAAACAATCAGCTGACAGGAAGCCTTCCTGACCAAATCTGCAGTCTTT TTCACCTGAGGGTTCTGAACGTGAGCACCAACCGATTCAAAGGTTCAATCCCGTTGAACATAACTAAGCTGGCCGAACTCCAAGTTCTCGATTTGTCGAT GAACGAGCTCAACGGTAGGATTCCAAGTGGCCTGGGTTTGCTTCTCAATCTTCAAGTTCTCAACTTGGGAAGAAATCTTCTTACGGGTCCCATCCCAGGT TCCATATCAAACATCTCTTCACTCCTGGAACTGCATCTTAGCACCAATTCCCTTTCCGGGTTTATTCCTGGTGAGTTGGGTCTTCTCCGGAGCTTGAAAG TTCTTGATCTGGCCATCAATGATCTCACTGGTACAGTTCCTCCTTCAATCTACAACATGTCTTCTCTGACGTATTTAGCCGTGGCCTCTAACCAGCTGTG GGGTGAAATCCCAAGGAATGTCGGGGAGACGCTTCCGAATCTTCTCGTCTTTAGGTTCTGCTTCAATATGTTCACTGGAGGTATTCCTGGTTCATTGCAC AATCTGACCAATATCCGGGTCATTCGAATGGCACATAATCTTCTCCAAGGAACCGTACCGCCTGGTTTGGGGAATCTGCCGTATCTGGAAATGTATAATA TTCGTTACAATAGGATAGTAAGTTCAGGTGATGACGGTCTTGGATTCATCACTTCTTTAACCAACAGTACTAGGCTGAAACTCCTTGCCATTGACGGGAA CCTTTTTGAGGGCGAGATTCCTGAATCTGTAGGTGACCTTTCGAAGGAGCTGACGCTATTGTACATGGGAGAAAATCGGATTCAAGGCAGTATACCATCC TCTATCGCCCGCCTTCATGGCTTGACGTTGCTGAACATAAGCTATAATGACATCACCGGAGAAATACCAGATGAAATTGGGCAGTTGGAGAACTTGCAAG AGTTGATTTTGGCTGGAAATAGAATCCAAGGAAGGATTCCAGATTCATTTGGTAAGCTCCTAAAGCTGAGTATAGCTGACCTGTCAAGAAATGAACTAGT CGGTAGAATTCCATCATCTTTTGGGAATTTCCACAGCCTTATTTCCTTGGATTTATCTAGCAACAGGTTCAATGGGAGCATACCGAAAGAAATTTTGTCT CTCCCAAGCTTGAGCATCGCCTTGAATTTGTCTCACAACCACCTAACAGGGGAATTGAATGAAGATATTGGTCTTCTACACAATATTGCTACCATTGATC TCTCCACCAACTTCCTGTCAGGTACTATTCCTAGCTCAATCAGAAATTGCAAGGGTCTAGTTCGCCTATATCTGGCAAGAAATTCATTCTCGGGAAGCAT CCCAAGCAATGTAAGAGAGCTGAGAGGGTTGGAAGTCCTAGACCTCTCCTACAACAATCTTTCTGGCGTCATCCCTCCAGAATTAATCCACCTACAGGCT CTTCAGTTCTTGGACCTTTCGTTCAATAACCACATGGAAGATTCTTGCAGTGATGAAGCACCTTTAAACAGTTCACATGTCCGATTTGAAGGCAACCCGA AGCTTTCCCATTCTAAACTCTGCAACAATGGTGGAACTAATCACAAGACTTGGATGACGGTCTATGTTAGTGTCGCTGCTCTAGCAACACTTACTTTATG CTCTTATCTGTTTATATGGATCTACCTCAGAAAGAACACAACAAAGACTACTCAAAACTTAGGAAAGGAAGAATACCATTTGGTCTCATTTGATGAGCTC CGTCAAGCAACCGAGAATTTTAGCAGTGAGAACCTTCTTGGAAGTGGTGGGTTTGGAACAGTATATAGAGGGAAATTGTCAGATAGCAGCGTTGTAGCAA TCAAAGCCTTGAACGTCAAAAGAAGTGGTTCTTGGGACAGCTTTATGGCAGAGTGCAAGGCTCTAAGTAAAGTGAGACATCGGAACATAGTGAAGTTAAT CACAACTTGCTCGAGCTTGGACTCCAAGAACGAAGAGTTCTGGGCTTTAGTTTACGAGTTCCTCCCTAATGGAAGTCTGGCAGACTGGCTAAACGCCAAC AAAGATGGAGGAAAGAGAGATGAGTTGACGCTGCTTCATAGATTGAACATAGCTATTGATGTGGCTAGTGCACTGGATTACCTGCACCATGGCTGTGATG TACCAGTGGTACACTGTGACTTGAAACCCAGCAACATTCTGTTAGACCAAGACATGACAGCAAAAGTTGGCGACTTTGGACTTGCAAAGCTGCTGATAAG CAATCATGAAGCTCCCATCAGCTCTGCGCATTTCATTAAAGGATCAATCGGCTACATTCCTCCAGAGTATGGAGTGGGGTCAAAACCTTCGATTGCAGGG GACACTTACAGCTTTGGGGTGATGCTGTTGCAGCTAATAACTGGGAAGAGCCCAATCGACGAGAGCTTGATGGACAGTGGGGAGAGTCTGATGGGTTGGG TTGGATCGTCGTACCCGGGAGAAGTGATGAAAGTGGTGGACCCGAAGGTGTTTCCATACGTAAAACCAGAGATGGAAGAGCAATGCATAGTCAAGATTCT GGGAGTCGGGCTGTGGTGTAGCGCCAGTTCCCCAGAGGGACGAATGCCCATGAGGGATGCGTTATGGAATTTGCAGACTGCGAGGAGCGATCTTGTTGCC AGTTATCTTCGAAGGCTGAAACGATAG
AA sequence Show only first row Show all	>Lus10019525 pacid=23181533 polypeptide=Lus10019525 locus=Lus10019525.g ID=Lus10019525.BGIv1.0 annot-version=v1.0 MNSTSTGVPAVYLCLFFLCFFLEVAFVDSTAALTSIDTDREALLAFRSQVVSSQFPHVLASWHDDQTSSSSPCNWTGVSCDDSGKNRVVALALPSLGLVG SITTFIGNLSMLQSLELQNNQLTGSLPDQICSLFHLRVLNVSTNRFKGSIPLNITKLAELQVLDLSMNELNGRIPSGLGLLLNLQVLNLGRNLLTGPIPG SISNISSLLELHLSTNSLSGFIPGELGLLRSLKVLDLAINDLTGTVPPSIYNMSSLTYLAVASNQLWGEIPRNVGETLPNLLVFRFCFNMFTGGIPGSLH NLTNIRVIRMAHNLLQGTVPPGLGNLPYLEMYNIRYNRIVSSGDDGLGFITSLTNSTRLKLLAIDGNLFEGEIPESVGDLSKELTLLYMGENRIQGSIPS SIARLHGLTLLNISYNDITGEIPDEIGQLENLQELILAGNRIQGRIPDSFGKLLKLSIADLSRNELVGRIPSSFGNFHSLISLDLSSNRFNGSIPKEILS LPSLSIALNLSHNHLTGELNEDIGLLHNIATIDLSTNFLSGTIPSSIRNCKGLVRLYLARNSFSGSIPSNVRELRGLEVLDLSYNNLSGVIPPELIHLQA LQFLDLSFNNHMEDSCSDEAPLNSSHVRFEGNPKLSHSKLCNNGGTNHKTWMTVYVSVAALATLTLCSYLFIWIYLRKNTTKTTQNLGKEEYHLVSFDEL RQATENFSSENLLGSGGFGTVYRGKLSDSSVVAIKALNVKRSGSWDSFMAECKALSKVRHRNIVKLITTCSSLDSKNEEFWALVYEFLPNGSLADWLNAN KDGGKRDELTLLHRLNIAIDVASALDYLHHGCDVPVVHCDLKPSNILLDQDMTAKVGDFGLAKLLISNHEAPISSAHFIKGSIGYIPPEYGVGSKPSIAG DTYSFGVMLLQLITGKSPIDESLMDSGESLMGWVGSSYPGEVMKVVDPKVFPYVKPEMEEQCIVKILGVGLWCSASSPEGRMPMRDALWNLQTARSDLVA SYLRRLKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10019525 [exp]	0	1
AT3G25610			ATPase E1-E2 type family prote...		Lus10034404 [exp]	2.0	0.9664
AT3G11920			glutaredoxin-related (.1)		Lus10012909 [exp]	7.1	0.9482
AT1G11300			protein serine/threonine kinas...		Lus10023391 [exp]	10.7	0.9658
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10033406 [exp]	11.6	0.9446
AT3G11920			glutaredoxin-related (.1)		Lus10030563 [exp]	13.0	0.9620
AT2G41860		CPK14	calcium-dependent protein kina...		Lus10025528 [exp]	13.3	0.9570
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10031388 [exp]	13.3	0.9639
AT5G62150			peptidoglycan-binding LysM dom...		Lus10015011 [exp]	14.9	0.9604
AT1G06840			Leucine-rich repeat protein ki...		Lus10019114 [exp]	17.3	0.9503
AT4G08850			Leucine-rich repeat receptor-l...		Lus10008712 [exp]	17.4	0.9334

Compare expression of checked genes

Lus10019525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.